Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019117A_C01 KMC019117A_c01
(469 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564771.1| NAM protein, putative; protein id: At1g61110.1,... 69 2e-11
gb|AAM65392.1| NAM protein, putative [Arabidopsis thaliana] 69 2e-11
ref|NP_473036.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.29
ref|NP_009741.1| Second MEF2-like Protein 1
Transcription fac... 34 0.86
gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining ... 33 1.1
>ref|NP_564771.1| NAM protein, putative; protein id: At1g61110.1, supported by cDNA:
38858. [Arabidopsis thaliana]
gi|26450820|dbj|BAC42518.1| unknown protein [Arabidopsis
thaliana]
Length = 323
Score = 69.3 bits (168), Expect = 2e-11
Identities = 38/75 (50%), Positives = 52/75 (68%), Gaps = 6/75 (8%)
Frame = -1
Query: 460 SGSAGSSFSTKRFH--GDLNSGSSNTEENNNNSFVSLLSQLPQSASFHANAILES----V 299
S S GS S+KRFH GDLN+ +N N SFVS+LS++PQS+ FHAN ++++
Sbjct: 252 SSSFGSFLSSKRFHHTGDLNN------DNYNVSFVSMLSEIPQSSGFHANGVMDTTSSLA 305
Query: 298 EDGVMRQQFQLPNIN 254
+ GV+RQ FQLPN+N
Sbjct: 306 DHGVLRQAFQLPNMN 320
>gb|AAM65392.1| NAM protein, putative [Arabidopsis thaliana]
Length = 323
Score = 69.3 bits (168), Expect = 2e-11
Identities = 38/75 (50%), Positives = 52/75 (68%), Gaps = 6/75 (8%)
Frame = -1
Query: 460 SGSAGSSFSTKRFH--GDLNSGSSNTEENNNNSFVSLLSQLPQSASFHANAILES----V 299
S S GS S+KRFH GDLN+ +N N SFVS+LS++PQS+ FHAN ++++
Sbjct: 252 SSSFGSFLSSKRFHHTGDLNN------DNYNVSFVSMLSEIPQSSGFHANGVMDTTSSLA 305
Query: 298 EDGVMRQQFQLPNIN 254
+ GV+RQ FQLPN+N
Sbjct: 306 DHGVLRQAFQLPNMN 320
>ref|NP_473036.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|7494299|pir||D71612 hypothetical protein PFB0540w -
malaria parasite (Plasmodium falciparum)
gi|3845211|gb|AAC71897.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1844
Score = 35.4 bits (80), Expect = 0.29
Identities = 20/67 (29%), Positives = 35/67 (51%)
Frame = -1
Query: 448 GSSFSTKRFHGDLNSGSSNTEENNNNSFVSLLSQLPQSASFHANAILESVEDGVMRQQFQ 269
GSS+ K+ ++ +G +NTE NN V++ SQ+ + +ILE ++G ++
Sbjct: 1226 GSSYLKKKKTAEIKTGENNTE--NNKGIVNVNSQVEEKGKSENKSILEIKKEGQIKNVIY 1283
Query: 268 LPNINGN 248
N N N
Sbjct: 1284 NNNNNNN 1290
>ref|NP_009741.1| Second MEF2-like Protein 1
Transcription factor of the MADS
(Mcm1p, Agamous, Deficiens, SRF) box family; closely
related to RLM1; Smp1p [Saccharomyces cerevisiae]
gi|586313|sp|P38128|SMP1_YEAST TRANSCRIPTION FACTOR SMP1
gi|626801|pir||S46054 probable DNA-binding transcription
factor YBR182c - yeast (Saccharomyces cerevisiae)
gi|536538|emb|CAA85143.1| ORF YBR182c [Saccharomyces
cerevisiae]
Length = 452
Score = 33.9 bits (76), Expect = 0.86
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 2/59 (3%)
Frame = -1
Query: 466 NESGSAGSSFSTKRFHGDLNSGSSNTEENNNNS--FVSLLSQLPQSASFHANAILESVE 296
N++G+AG S HG ++ SN + NS + L L SFHAN ESV+
Sbjct: 141 NDAGNAGVSTPLVHCHGAISRSGSNHSDCARNSADYQMLQGGLNSGGSFHANDYKESVD 199
>gb|AAO50779.1| similar to Mus musculus (Mouse). Sex-determining region Y protein
(Testis-determining factor) [Dictyostelium discoideum]
Length = 1461
Score = 33.5 bits (75), Expect = 1.1
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = -1
Query: 466 NESGSAGSSFSTKRFHGDLNSGSSNTEENNNNSFVSLLSQLPQSASFHANAIL--ESVED 293
N++ ++ +T D+NSGS+N+ ENNN+ + L+ PQS N+ L +
Sbjct: 271 NKNDTSNDDINT--IESDINSGSNNSSENNNSKNSNSLN-FPQSFLSDPNSPLFENEKQS 327
Query: 292 GVMRQQFQLPNINGN 248
+ Q + NIN N
Sbjct: 328 SSISQPLEKSNINNN 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,055,556
Number of Sequences: 1393205
Number of extensions: 7878109
Number of successful extensions: 40179
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 26516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36162
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
