Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019116A_C01 KMC019116A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG42759.1|AF302669_1 ubiquitin-specific protease 21 [Arabido... 49 5e-05
ref|NP_568667.1| ubiquitin-specific protease 21 (UBP21); protein... 49 5e-05
ref|NP_567544.1| ubiquitin-specific protease 20 (UBP20), putativ... 46 3e-04
pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana... 46 3e-04
ref|NP_700518.1| hypothetical protein [Plasmodium falciparum 3D7... 35 0.45
>gb|AAG42759.1|AF302669_1 ubiquitin-specific protease 21 [Arabidopsis thaliana]
Length = 737
Score = 48.5 bits (114), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = -3
Query: 538 VSGDEVLSQEAYILFYARQGTPWFSSIMEDVNSSYQ 431
+S + VLS+ AYILFYAR+GTPWFSS E + + ++
Sbjct: 451 ISEERVLSRPAYILFYAREGTPWFSSTFEQLKTVFE 486
>ref|NP_568667.1| ubiquitin-specific protease 21 (UBP21); protein id: At5g46740.1,
supported by cDNA: gi_11993481 [Arabidopsis thaliana]
gi|9758510|dbj|BAB08918.1| contains similarity to
ubiquitin specific protease~gene_id:MZA15.16
[Arabidopsis thaliana]
Length = 732
Score = 48.5 bits (114), Expect = 5e-05
Identities = 20/36 (55%), Positives = 28/36 (77%)
Frame = -3
Query: 538 VSGDEVLSQEAYILFYARQGTPWFSSIMEDVNSSYQ 431
+S + VLS+ AYILFYAR+GTPWFSS E + + ++
Sbjct: 451 ISEERVLSRPAYILFYAREGTPWFSSTFEQLKTVFE 486
>ref|NP_567544.1| ubiquitin-specific protease 20 (UBP20), putative; protein id:
At4g17895.1, supported by cDNA: gi_11993479 [Arabidopsis
thaliana] gi|11993480|gb|AAG42758.1|AF302668_1
ubiquitin-specific protease 20 [Arabidopsis thaliana]
Length = 695
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -3
Query: 538 VSGDEVLSQEAYILFYARQGTPWFSSIMEDV 446
+ D VLSQ++YILFYAR+GT WFSS+ E++
Sbjct: 458 IDEDMVLSQDSYILFYAREGTRWFSSVYEEM 488
>pir||T05075 hypothetical protein T6K21.70 - Arabidopsis thaliana
gi|2894598|emb|CAA17132.1| putative protein [Arabidopsis
thaliana] gi|7268541|emb|CAB78791.1| putative protein
[Arabidopsis thaliana]
Length = 1082
Score = 46.2 bits (108), Expect = 3e-04
Identities = 19/31 (61%), Positives = 26/31 (83%)
Frame = -3
Query: 538 VSGDEVLSQEAYILFYARQGTPWFSSIMEDV 446
+ D VLSQ++YILFYAR+GT WFSS+ E++
Sbjct: 845 IDEDMVLSQDSYILFYAREGTRWFSSVYEEM 875
>ref|NP_700518.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23494907|gb|AAN35242.1|AE014829_42 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1190
Score = 35.4 bits (80), Expect = 0.45
Identities = 22/77 (28%), Positives = 37/77 (47%)
Frame = +2
Query: 5 STNVSININNVCTKQN*TNNGYEQMYLSILTIVLTKQNYTKNGYEQSYMKETFKSPPLLY 184
+ N + N NN N NN Y +Y + + L ++YT N +E K FK P+ Y
Sbjct: 792 NNNNNNNNNNNNNNNNNNNNNYNNIYKMVHS--LHNEDYTCNIFE----KHLFKRTPIFY 845
Query: 185 EFLLNMTLLIRWHLVMC 235
+ +L + H+++C
Sbjct: 846 KDILYSEINYSGHILLC 862
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,620,295
Number of Sequences: 1393205
Number of extensions: 11143541
Number of successful extensions: 42794
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 37722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42108
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
