Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019115A_C02 KMC019115A_c02
(1058 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA08802.1| MADs-box protein, GDEF1 [Gerbera hybrid cultivar] 262 6e-69
dbj|BAC11907.1| MADS-box protein [Malus x domestica] 262 8e-69
pir||S23731 MADS box protein TDR6 - tomato (fragment) 261 2e-68
gb|AAC13695.2| PTD protein [Populus balsamifera subsp. trichocarpa] 259 5e-68
emb|CAC80856.1| B-type MADS box protein [Malus x domestica] 259 5e-68
>emb|CAA08802.1| MADs-box protein, GDEF1 [Gerbera hybrid cultivar]
Length = 226
Score = 262 bits (670), Expect = 6e-69
Identities = 145/233 (62%), Positives = 166/233 (71%), Gaps = 11/233 (4%)
Frame = -2
Query: 964 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISP 785
MGRGKIEIK IEN TNRQVTYSKRRNGIFKKAHEL+VLCDAKVSLIMFS K HEYISP
Sbjct: 1 MGRGKIEIKKIENNTNRQVTYSKRRNGIFKKAHELTVLCDAKVSLIMFSNTGKFHEYISP 60
Query: 784 GLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHR-LGEGLDMDDL 608
TTK++ DQYQ T+G DLW SHYE+M E +KKLK+ NNKLRR+IR R LGE D D L
Sbjct: 61 STTTKKMYDQYQSTVG-FDLWSSHYERMKETMKKLKDTNNKLRREIRQRVLGE--DFDGL 117
Query: 607 SFQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHP 428
L LE+ M S+ +RERK+HVIKT+TDTCRK+VR+LEQ NGNL L+ + IH
Sbjct: 118 DMNDLTSLEQHMQDSLTLVRERKYHVIKTQTDTCRKRVRNLEQRNGNLRLDYE---TIHQ 174
Query: 427 QFVLHD----EGDPESAVALANGASNLYAFCQHHTHVNLPPH------HHHVH 299
+D EGD ES VA +NG SNLYAFC H ++ PH H H H
Sbjct: 175 LDKKYDTGENEGDYESVVAYSNGVSNLYAFCVHPNNI---PHGAGYELHDHQH 224
>dbj|BAC11907.1| MADS-box protein [Malus x domestica]
Length = 237
Score = 262 bits (669), Expect = 8e-69
Identities = 151/246 (61%), Positives = 176/246 (71%), Gaps = 16/246 (6%)
Frame = -2
Query: 964 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISP 785
MGRGKIEIKLIEN TNRQVTYSKRRNGIFKKA EL+VLCDAKVSLIM S +KMHEYISP
Sbjct: 1 MGRGKIEIKLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTSKMHEYISP 60
Query: 784 GLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHRLGEGLDMDDLS 605
TTK + D YQKT+G IDLWR+HYE M + L KLKEINNKLRR+IR RLG D++ LS
Sbjct: 61 TTTTKSMYDDYQKTMG-IDLWRTHYESMKDTLWKLKEINNKLRREIRQRLGH--DLNGLS 117
Query: 604 FQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQ 425
+ LR LE+ M SS+ IRERK+HVIKT+T+T +KKV++LE+ GN +L E +PQ
Sbjct: 118 YDDLRSLEDKMQSSLDAIRERKYHVIKTQTETTKKKVKNLEERRGN-MLHGYEAASENPQ 176
Query: 424 FVLHD-EGDPESAVALANGASNLYAFCQHHT-----HVNLPPHHH----------HVHGE 293
+ D EGD ESA+ LANGA+NLY F H H NL HHH H+H
Sbjct: 177 YCYVDNEGDYESALVLANGANNLYTFQLHRNSDQLHHPNL--HHHRGSSLGSSITHLH-- 232
Query: 292 DDLRLA 275
DLRLA
Sbjct: 233 -DLRLA 237
>pir||S23731 MADS box protein TDR6 - tomato (fragment)
Length = 222
Score = 261 bits (666), Expect = 2e-68
Identities = 138/227 (60%), Positives = 165/227 (71%)
Frame = -2
Query: 955 GKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLT 776
GKIEIK IEN TNRQVTYSKRRNGIFKK EL+VLCDAK+SLIM S K HEY SP T
Sbjct: 1 GKIEIKKIENSTNRQVTYSKRRNGIFKKRKELTVLCDAKISLIMLSSTRKYHEYTSPNTT 60
Query: 775 TKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHRLGEGLDMDDLSFQQ 596
TK++IDQYQ LG +D+W HYEKM ENLK+LKEINNKLRR+IR R GE DM L+ Q+
Sbjct: 61 TKKMIDQYQSALG-VDIWSIHYEKMQENLKRLKEINNKLRREIRQRTGE--DMSGLNLQE 117
Query: 595 LRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQFVL 416
L L+E++ S+ +IRERK+HVIK +TDTC+KK R+LE+ NGNL+L+L+ KC V+
Sbjct: 118 LCHLQENITESVAEIRERKYHVIKNQTDTCKKKARNLEEQNGNLVLDLEAKCEDPKYGVV 177
Query: 415 HDEGDPESAVALANGASNLYAFCQHHTHVNLPPHHHHVHGEDDLRLA 275
+EG SAVA ANG NLYAF H NL + G DLRL+
Sbjct: 178 ENEGHYHSAVAFANGVHNLYAFRLQPLHPNL--QNEGGFGSRDLRLS 222
>gb|AAC13695.2| PTD protein [Populus balsamifera subsp. trichocarpa]
Length = 227
Score = 259 bits (662), Expect = 5e-68
Identities = 140/221 (63%), Positives = 170/221 (76%)
Frame = -2
Query: 964 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISP 785
MGRGKIEIK IENPTNRQVTYSKRRNGIFKKA EL+VLCDAKVSLIMFS NK++EYISP
Sbjct: 1 MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKLNEYISP 60
Query: 784 GLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHRLGEGLDMDDLS 605
+TK+I DQYQ LG IDLW + YEKM E+L+KL +IN+KLR++IR R GEGL +DLS
Sbjct: 61 STSTKKIYDQYQNALG-IDLWGTQYEKMQEHLRKLNDINHKLRQEIRQRRGEGL--NDLS 117
Query: 604 FQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELKEKCVIHPQ 425
LR LE+ M ++ +R RK+HVIKT+ +T RKKV++LE+ +GNLL+E + K + Q
Sbjct: 118 IDHLRGLEQHMTEALNGVRGRKYHVIKTQNETYRKKVKNLEERHGNLLMEYEAK-LEDRQ 176
Query: 424 FVLHDEGDPESAVALANGASNLYAFCQHHTHVNLPPHHHHV 302
+ L D E+AVALANGASNLYAF HH H HHHH+
Sbjct: 177 YGLVDN---EAAVALANGASNLYAFRLHHGH----NHHHHL 210
>emb|CAC80856.1| B-type MADS box protein [Malus x domestica]
Length = 232
Score = 259 bits (662), Expect = 5e-68
Identities = 146/238 (61%), Positives = 176/238 (73%), Gaps = 8/238 (3%)
Frame = -2
Query: 964 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISP 785
MGRGKIEIKLIEN TNRQVTYSKRRNGIFKKA EL+VLCDAKVSLIM S NKMHEYISP
Sbjct: 1 MGRGKIEIKLIENQTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMLSNTNKMHEYISP 60
Query: 784 GLTTKRIIDQYQKTLGDIDLWRSHYEKMLENLKKLKEINNKLRRQIRHRLGEGLDMDDLS 605
TTK + D YQKT+G IDLWR+H E M + L KLKEINNKLRR+IR RLG D++ LS
Sbjct: 61 TTTTKSMYDDYQKTMG-IDLWRTHEESMKDTLWKLKEINNKLRREIRQRLGH--DLNGLS 117
Query: 604 FQQLRKLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLEL--KEKCVIH 431
F +L L+++M SS+ IR+RK+HVIKT+T+T +KKV++LEQ GN+L +E
Sbjct: 118 FDELASLDDEMQSSLDAIRQRKYHVIKTQTETTKKKVKNLEQRRGNMLHGYFDQEAAGED 177
Query: 430 PQFVLHD-EGDPESAVALANGASNLYAFCQHHTHV-----NLPPHHHHVHGEDDLRLA 275
PQ+ D EGD ESA+AL+NGA+NLY F HH ++ +L H+H DLRLA
Sbjct: 178 PQYGYEDNEGDYESALALSNGANNLYTFHLHHRNLHHGGSSLGSSITHLH---DLRLA 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 909,375,793
Number of Sequences: 1393205
Number of extensions: 20327023
Number of successful extensions: 70376
Number of sequences better than 10.0: 1037
Number of HSP's better than 10.0 without gapping: 63351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68923
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 62912456556
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
