Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019114A_C01 KMC019114A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_649496.1| CG17735-PA [Drosophila melanogaster] gi|2317048... 37 0.26
gb|AAL68853.1|AF466199_12 gb protein [Sorghum bicolor] 37 0.26
ref|NP_778753.1| cellulose 1,4-beta-cellobiosidase [Xylella fast... 35 0.57
dbj|BAA25496.2| KIAA0570 protein [Homo sapiens] 35 0.75
pir||T00338 hypothetical protein KIAA0570 - human 35 0.75
>ref|NP_649496.1| CG17735-PA [Drosophila melanogaster] gi|23170484|gb|AAF52092.2|
CG17735-PA [Drosophila melanogaster]
Length = 2228
Score = 36.6 bits (83), Expect = 0.26
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = +1
Query: 322 VVSSTKCGAGSSKITAYSGVDGKRNTSSHAGISLNKPHSPGSTSSVGSASARISSGSTGF 501
V S GA SS + SGV ++++SS A +N +TSS S+S S G +
Sbjct: 1467 VTSGAAAGAASSSSSCSSGVQKQQSSSSSASSCVN------ATSSCSSSSGVASGGGSLT 1520
Query: 502 LRLHIVSASLLNRRTEV 552
+ H S+ + ++TE+
Sbjct: 1521 KKAHKSSSKFMRKKTEL 1537
>gb|AAL68853.1|AF466199_12 gb protein [Sorghum bicolor]
Length = 1009
Score = 36.6 bits (83), Expect = 0.26
Identities = 23/70 (32%), Positives = 32/70 (44%), Gaps = 4/70 (5%)
Frame = +1
Query: 319 GVVSSTKCGAGSSKITAYSGVDGKRNTSSHAGISL----NKPHSPGSTSSVGSASARISS 486
G ++ S T DG+ T HA L N+ H PGS + GSA+ RI+
Sbjct: 184 GQITHQNAMQNSHSDTTQGKRDGQGTTQKHAKPYLKNSQNEQHFPGSDPAHGSANVRIAG 243
Query: 487 GSTGFLRLHI 516
G+ G R H+
Sbjct: 244 GTVGPARRHV 253
>ref|NP_778753.1| cellulose 1,4-beta-cellobiosidase [Xylella fastidiosa Temecula1]
gi|28056523|gb|AAO28402.1| cellulose
1,4-beta-cellobiosidase [Xylella fastidiosa Temecula1]
Length = 643
Score = 35.4 bits (80), Expect = 0.57
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = +1
Query: 328 SSTKCGAGSSKITAYSGVDGKRNTSSHAGISLNKPHSPGSTSSVGSASARISSGSTGF 501
SS+ +GSS + S G ++SS + S S GSTSS GS S+ SS TGF
Sbjct: 487 SSSSSSSGSSSSSGSSSSSGS-SSSSGSTSSSGSTSSSGSTSSSGSTSSSGSSSGTGF 543
>dbj|BAA25496.2| KIAA0570 protein [Homo sapiens]
Length = 3412
Score = 35.0 bits (79), Expect = 0.75
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +1
Query: 349 GSSKITAYSGVDGKRNTSSHAGISLNKPHSPGSTSSVGSASARISSGSTG 498
GSS TA SG DG S +G HS GS++ V S+ A S+GS G
Sbjct: 429 GSSDETANSGEDGSSGPGSSSG------HSDGSSNEVNSSHASQSAGSPG 472
>pir||T00338 hypothetical protein KIAA0570 - human
Length = 1273
Score = 35.0 bits (79), Expect = 0.75
Identities = 22/50 (44%), Positives = 27/50 (54%)
Frame = +1
Query: 349 GSSKITAYSGVDGKRNTSSHAGISLNKPHSPGSTSSVGSASARISSGSTG 498
GSS TA SG DG S +G HS GS++ V S+ A S+GS G
Sbjct: 412 GSSDETANSGEDGSSGPGSSSG------HSDGSSNEVNSSHASQSAGSPG 455
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,719,772
Number of Sequences: 1393205
Number of extensions: 11661872
Number of successful extensions: 53315
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 50411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52763
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
