Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019113A_C01 KMC019113A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G84545 bHLH transcription factor [imported] - Arabidopsis t... 145 2e-34
ref|NP_179283.2| bHLH protein; protein id: At2g16910.1 [Arabidop... 145 2e-34
emb|CAD54298.1| bHLH transcription factor [Brassica napus] 144 4e-34
ref|NP_172746.1| bHLH protein; protein id: At1g12860.1 [Arabidop... 50 1e-05
pir||C86262 F13K23.12 protein - Arabidopsis thaliana gi|8698734|... 50 1e-05
>pir||G84545 bHLH transcription factor [imported] - Arabidopsis thaliana
gi|3757520|gb|AAC64222.1| bHLH transcription factor
[Arabidopsis thaliana]
Length = 467
Score = 145 bits (366), Expect = 2e-34
Identities = 73/139 (52%), Positives = 97/139 (69%), Gaps = 2/139 (1%)
Frame = -1
Query: 466 QQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVF 287
Q+MEPQV+VA +DG E+FVKV CE++PGGF +LMEAL++LG++V +A T + LVSNVF
Sbjct: 320 QEMEPQVDVAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVF 379
Query: 286 KVEKKDSEMVEAEDVRDSLLELTRNRTRGWSHEMTATS--ENGVGSREQHHLNNHQMGAY 113
KVEK D+EMV+AE VR+SLLE+TRN +RGW + AT +N + H ++HQ
Sbjct: 380 KVEKNDNEMVQAEHVRNSLLEITRNTSRGWQDDQMATGSMQNEKNEVDYQHYDDHQHHNG 439
Query: 112 HPHPFHS*NFNMSSHQLCH 56
H HPF N S+H H
Sbjct: 440 HHHPFDH-QMNQSAHHHHH 457
>ref|NP_179283.2| bHLH protein; protein id: At2g16910.1 [Arabidopsis thaliana]
Length = 571
Score = 145 bits (366), Expect = 2e-34
Identities = 73/139 (52%), Positives = 97/139 (69%), Gaps = 2/139 (1%)
Frame = -1
Query: 466 QQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVF 287
Q+MEPQV+VA +DG E+FVKV CE++PGGF +LMEAL++LG++V +A T + LVSNVF
Sbjct: 424 QEMEPQVDVAQLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRYLSLVSNVF 483
Query: 286 KVEKKDSEMVEAEDVRDSLLELTRNRTRGWSHEMTATS--ENGVGSREQHHLNNHQMGAY 113
KVEK D+EMV+AE VR+SLLE+TRN +RGW + AT +N + H ++HQ
Sbjct: 484 KVEKNDNEMVQAEHVRNSLLEITRNTSRGWQDDQMATGSMQNEKNEVDYQHYDDHQHHNG 543
Query: 112 HPHPFHS*NFNMSSHQLCH 56
H HPF N S+H H
Sbjct: 544 HHHPFDH-QMNQSAHHHHH 561
>emb|CAD54298.1| bHLH transcription factor [Brassica napus]
Length = 564
Score = 144 bits (364), Expect = 4e-34
Identities = 77/149 (51%), Positives = 101/149 (67%), Gaps = 5/149 (3%)
Frame = -1
Query: 466 QQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVF 287
Q+MEPQV+VA +DG E+FVKV CE++PGGF +LMEAL++LG++V +A T LVSNVF
Sbjct: 419 QEMEPQVDVAHLDGREFFVKVICEYKPGGFTRLMEALDSLGLEVTNANTTRFLSLVSNVF 478
Query: 286 KVEKKDSEMVEAEDVRDSLLELTRNRTRGWSHEMTAT-----SENGVGSREQHHLNNHQM 122
KVEK DSEMV AE VR+SLLE+TRN +RGW + AT +N VG QH+ ++H
Sbjct: 479 KVEKNDSEMVPAEHVRNSLLEITRNTSRGWHDDQMATGSIQNEKNEVG--YQHYDDHHHH 536
Query: 121 GAYHPHPFHS*NFNMSSHQLCH*LNLFQN 35
G + H H N S+H +N +QN
Sbjct: 537 GGH--HQLHDHQMNQSAHHHLQHINHYQN 563
>ref|NP_172746.1| bHLH protein; protein id: At1g12860.1 [Arabidopsis thaliana]
Length = 828
Score = 50.1 bits (118), Expect = 1e-05
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = -1
Query: 457 EPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKVE 278
+P+VEV L +G + +FC RPG M AL+ LG+DV A ++ G +VF+ E
Sbjct: 742 QPRVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAE 801
Query: 277 K-KDSEMVEAEDVRDSLLE 224
+ ++ V E ++ LL+
Sbjct: 802 QCQEDHDVLPEQIKAVLLD 820
>pir||C86262 F13K23.12 protein - Arabidopsis thaliana
gi|8698734|gb|AAF78492.1|AC012187_12 Contains similarity
to bHLH protein (Atmyc-146) from Arabidopsis thaliana
gb|AF013465 and contains a helix-loop-helix DNA-binding
PF|00010 domain. EST gb|AI999584 comes from this gene
gi|26451079|dbj|BAC42644.1| putative bHLH transcription
factor bHLH033 [Arabidopsis thaliana]
gi|28951035|gb|AAO63441.1| At1g12860 [Arabidopsis
thaliana]
Length = 450
Score = 50.1 bits (118), Expect = 1e-05
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = -1
Query: 457 EPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKVE 278
+P+VEV L +G + +FC RPG M AL+ LG+DV A ++ G +VF+ E
Sbjct: 364 QPRVEVRLREGKAVNIHMFCGRRPGLLLSTMRALDNLGLDVQQAVISCFNGFALDVFRAE 423
Query: 277 K-KDSEMVEAEDVRDSLLE 224
+ ++ V E ++ LL+
Sbjct: 424 QCQEDHDVLPEQIKAVLLD 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,438,944
Number of Sequences: 1393205
Number of extensions: 10687033
Number of successful extensions: 31076
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 29198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30918
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
