Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019111A_C01 KMC019111A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194144.1| putative protein; protein id: At4g24130.1 [Arab... 158 4e-38
gb|AAK39583.1|AC025296_18 hypothetical protein [Oryza sativa] 123 1e-27
ref|NP_564720.1| expressed protein; protein id: At1g56580.1, sup... 103 2e-21
ref|NP_563841.1| expressed protein; protein id: At1g09310.1, sup... 103 2e-21
dbj|BAA96147.1| unnamed protein product [Oryza sativa (japonica ... 100 1e-20
>ref|NP_194144.1| putative protein; protein id: At4g24130.1 [Arabidopsis thaliana]
gi|7487169|pir||T13461 hypothetical protein T19F6.120 -
Arabidopsis thaliana gi|2262104|gb|AAB63612.1| unknown
protein [Arabidopsis thaliana]
gi|5668641|emb|CAB51656.1| putative protein [Arabidopsis
thaliana] gi|7269262|emb|CAB81331.1| putative protein
[Arabidopsis thaliana] gi|26451413|dbj|BAC42806.1|
unknown protein [Arabidopsis thaliana]
Length = 157
Score = 158 bits (400), Expect = 4e-38
Identities = 77/113 (68%), Positives = 89/113 (78%), Gaps = 1/113 (0%)
Frame = -3
Query: 581 PLQDLVECGRVRETGFVWMKQKAPIEHFFEGTKTLVSYAVEVTCYVEKFKMKKMSGIKSK 402
PL++LVECGRVR TG+VWMKQ P EHFFE T T VSY +EVT YV+K MKKM+G+KSK
Sbjct: 44 PLKNLVECGRVRATGYVWMKQDTPYEHFFEATNTRVSYGLEVTAYVDKCCMKKMTGVKSK 103
Query: 401 QAFLWVPISEMSMDGPGAKKIVFKTPLGIGKSFPVTAFMTIEEKEK-YLQGKK 246
Q FLWVPI EMSM+ P +KKI FKTP+GIG+SFPVT FM EEK YL+ K
Sbjct: 104 QMFLWVPIVEMSMEEPKSKKIYFKTPMGIGRSFPVTGFMDEEEKRNFYLENPK 156
>gb|AAK39583.1|AC025296_18 hypothetical protein [Oryza sativa]
Length = 136
Score = 123 bits (309), Expect = 1e-27
Identities = 58/98 (59%), Positives = 76/98 (77%)
Frame = -3
Query: 581 PLQDLVECGRVRETGFVWMKQKAPIEHFFEGTKTLVSYAVEVTCYVEKFKMKKMSGIKSK 402
PL+ L ECG VRETGFVWM+QKAP EH+F GT T V Y VEVT +VE+ +MK+M+G++
Sbjct: 3 PLRGLEECGLVRETGFVWMRQKAPYEHYFRGTGTRVRYDVEVTAFVEEGRMKRMTGVRRG 62
Query: 401 QAFLWVPISEMSMDGPGAKKIVFKTPLGIGKSFPVTAF 288
+ LWVPI EMS+D GA ++ FK+ +GIG+SFP +AF
Sbjct: 63 RLMLWVPIVEMSLD--GADRVYFKSNVGIGRSFPASAF 98
>ref|NP_564720.1| expressed protein; protein id: At1g56580.1, supported by cDNA:
gi_16648668, supported by cDNA: gi_20856238 [Arabidopsis
thaliana] gi|25404133|pir||E96607 hypothetical protein
F25P12.97 [imported] - Arabidopsis thaliana
gi|9954754|gb|AAG09105.1|AC009323_16 Unknown protein
[Arabidopsis thaliana] gi|16648669|gb|AAL25527.1|
At1g56580/F25P12_18 [Arabidopsis thaliana]
gi|20856239|gb|AAM26655.1| At1g56580/F25P12_18
[Arabidopsis thaliana]
Length = 166
Score = 103 bits (256), Expect = 2e-21
Identities = 54/120 (45%), Positives = 78/120 (65%), Gaps = 2/120 (1%)
Frame = -3
Query: 581 PLQDLVECGRVRETGFVWMKQKAPIEHFFEGTKTLVSYAVEVTCYVEKFKMKKMSGIKSK 402
PL+D+ E G RETG VW+KQK I H FE LVSYA EV VE K+KK++G+K+K
Sbjct: 40 PLKDIEEVGYDRETGIVWLKQKKSITHKFEAIGKLVSYATEVIAQVEVGKIKKLTGVKAK 99
Query: 401 QAFLWVPISEMSMDGP-GAKKIVFKTPLGIGKSFPVTAFMTIE-EKEKYLQGKKEEEIKE 228
+ +WV ++E+ ++ P + KI F+TP G+ ++FPV+AF+ E EK + E+KE
Sbjct: 100 ELLIWVTLNELVLEQPTSSGKINFRTPTGLSRTFPVSAFVVPEVEKPATEKNNGTTEVKE 159
>ref|NP_563841.1| expressed protein; protein id: At1g09310.1, supported by cDNA:
11073., supported by cDNA: gi_13194795, supported by
cDNA: gi_15028182, supported by cDNA: gi_19310812
[Arabidopsis thaliana] gi|25402533|pir||B86226
hypothetical protein [imported] - Arabidopsis thaliana
gi|4337175|gb|AAD18096.1| ESTs gb|T20589, gb|T04648,
gb|AA597906, gb|T04111, gb|R84180, gb|R65428, gb|T44439,
gb|T76570, gb|R90004, gb|T45020, gb|T42457, gb|T20921,
gb|AA042762 and gb|AA720210 come from this gene.
[Arabidopsis thaliana]
gi|13194796|gb|AAK15560.1|AF348589_1 unknown protein
[Arabidopsis thaliana] gi|15028183|gb|AAK76588.1|
unknown protein [Arabidopsis thaliana]
gi|19310813|gb|AAL85137.1| unknown protein [Arabidopsis
thaliana] gi|21536763|gb|AAM61095.1| unknown
[Arabidopsis thaliana]
Length = 179
Score = 103 bits (256), Expect = 2e-21
Identities = 56/118 (47%), Positives = 75/118 (63%)
Frame = -3
Query: 581 PLQDLVECGRVRETGFVWMKQKAPIEHFFEGTKTLVSYAVEVTCYVEKFKMKKMSGIKSK 402
PL+D+ E G RE+G VW+KQK I H F LVSY EVT VE K+KK++G+K+K
Sbjct: 40 PLKDIEEVGYDRESGVVWLKQKKSITHKFTEIDKLVSYGTEVTAIVETGKIKKLTGVKAK 99
Query: 401 QAFLWVPISEMSMDGPGAKKIVFKTPLGIGKSFPVTAFMTIEEKEKYLQGKKEEEIKE 228
+ +WV I+E+ + P KI FKTP + ++FPVTAF+ EE K + KEE KE
Sbjct: 100 ELLIWVTINEIYTEEP-PTKITFKTPTTLSRTFPVTAFIVPEEPAKE-EPAKEEPAKE 155
>dbj|BAA96147.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|8096617|dbj|BAA96189.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 167
Score = 100 bits (250), Expect = 1e-20
Identities = 46/98 (46%), Positives = 67/98 (67%)
Frame = -3
Query: 581 PLQDLVECGRVRETGFVWMKQKAPIEHFFEGTKTLVSYAVEVTCYVEKFKMKKMSGIKSK 402
PL ++ E G R TGFVW++QK I H F+ VS+A EVT +VE +MK+++G K+K
Sbjct: 41 PLAEMEEVGYNRATGFVWLRQKKAITHTFKQISRQVSFAAEVTAFVEDRRMKRVTGAKTK 100
Query: 401 QAFLWVPISEMSMDGPGAKKIVFKTPLGIGKSFPVTAF 288
+ +WV +S+M +D A KI FKTP G+G+++PV AF
Sbjct: 101 ELLIWVSLSDMFIDKDDASKITFKTPTGLGRTYPVDAF 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,089,659
Number of Sequences: 1393205
Number of extensions: 10848280
Number of successful extensions: 30353
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 27837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30195
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
