Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019107A_C01 KMC019107A_c01
(407 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13204.1| putative serine protease-like protein [Arabidopsi... 54 6e-07
gb|AAO51838.1| similar to hypothetical protein [Schizosaccharomy... 44 6e-04
ref|NP_701427.1| eukaryotic translation initiation factor 3 subu... 42 0.001
pir||T06453 probable legumin B - garden pea gi|2578438|emb|CAA47... 42 0.001
gb|AAO51907.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 41 0.003
>gb|AAM13204.1| putative serine protease-like protein [Arabidopsis thaliana]
gi|23197988|gb|AAN15521.1| putative serine protease-like
protein [Arabidopsis thaliana]
Length = 434
Score = 53.5 bits (127), Expect = 6e-07
Identities = 31/102 (30%), Positives = 48/102 (46%), Gaps = 3/102 (2%)
Frame = +1
Query: 109 MEGLIKGLADVILGANDQ---DRDQHHQSHDDEERSRSSWAEVVSGDQDQDQQDQTQSHQ 279
M+GLI+GL DV +G N + D + + +ERSRS+WA VVSG+++ + SH
Sbjct: 1 MDGLIRGLVDVAIGGNQRRGGDDGGDDEGNSRDERSRSTWANVVSGEEEDQNRAGGSSH- 59
Query: 280 GSGSRFSNRPHREKEEEESWRDDSYSHKEKYRPQREECESES 405
R+ EE W ++ EE + E+
Sbjct: 60 ---------GRRQNSEENQWEKKGERLPTRHSQSHEEDQEEN 92
>gb|AAO51838.1| similar to hypothetical protein [Schizosaccharomyces pombe]
[Dictyostelium discoideum]
Length = 923
Score = 43.5 bits (101), Expect = 6e-04
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Frame = +1
Query: 130 LADVILGANDQDRDQHHQSHDDEE----RSRSSWAEVVSGDQDQDQ-QDQTQSHQGSGSR 294
+AD++ + D++ +S DDEE S E SG++++++ ++ Q Q
Sbjct: 413 VADLLSEHQNSDQELDQESDDDEEDEEDEEESGEEEEESGEEEEEESSEEEQVKQPVKKP 472
Query: 295 FSNRPHREKEEEESWRDDSYSHKEKYRPQREECESE 402
P E EEEES ++ S +E+ + EE E E
Sbjct: 473 IKQEPKEESEEEESEEEEEESEEEEEESEGEESEEE 508
>ref|NP_701427.1| eukaryotic translation initiation factor 3 subunit 8, putative
[Plasmodium falciparum 3D7]
gi|23496594|gb|AAN36151.1|AE014845_6 eukaryotic
translation initiation factor 3 subunit 8, putative
[Plasmodium falciparum 3D7]
Length = 984
Score = 42.4 bits (98), Expect = 0.001
Identities = 22/76 (28%), Positives = 33/76 (42%), Gaps = 6/76 (7%)
Frame = +1
Query: 157 DQDRDQHHQSHDDEERSRSSWAEVVSGDQDQDQQDQTQSHQGSGSR------FSNRPHRE 318
D D D DDEE + D ++D++DQ G G + S + +
Sbjct: 177 DDDEDDEDNEEDDEEEEEDEEEQEDQDDDNEDEKDQDDDEDGKGKKKLSSKTKSKKGKEK 236
Query: 319 KEEEESWRDDSYSHKE 366
KEE+E + DD+ KE
Sbjct: 237 KEEKEDYDDDNDEEKE 252
>pir||T06453 probable legumin B - garden pea gi|2578438|emb|CAA47809.1| legumin
(minor small) [Pisum sativum]
Length = 566
Score = 42.4 bits (98), Expect = 0.001
Identities = 27/106 (25%), Positives = 48/106 (44%), Gaps = 3/106 (2%)
Frame = +1
Query: 97 PQDIMEGLIK---GLADVILGANDQDRDQHHQSHDDEERSRSSWAEVVSGDQDQDQQDQT 267
PQD ++K GL + +++ H Q ++EE + S +D+D+ ++
Sbjct: 258 PQDERGQIVKVEDGLHIISPELQEEEEQSHSQRKEEEEEEQEQRHRKHSKKEDEDEDEEE 317
Query: 268 QSHQGSGSRFSNRPHREKEEEESWRDDSYSHKEKYRPQREECESES 405
+ + +R H EKEEE+ SY + K++ E E ES
Sbjct: 318 EEEREQ----RHRKHSEKEEEDEDEPRSYETRRKWKKHTAEKERES 359
>gb|AAO51907.1| similar to Arabidopsis thaliana (Mouse-ear cress). Hypothetical
79.2 kDa protein [Dictyostelium discoideum]
Length = 895
Score = 41.2 bits (95), Expect = 0.003
Identities = 22/79 (27%), Positives = 42/79 (52%), Gaps = 1/79 (1%)
Frame = +1
Query: 157 DQDRDQHHQSHDDEERSRSSWAEVVSGDQDQDQQDQTQSHQGSGSRFSNRPHREKEEEES 336
D+DRD+ D +R R + ++ +D +D ++ + SG+ + NR H +KE E
Sbjct: 297 DRDRDRDRDRDRDRDRGRDRDRDYEDRNRSRDNEDSGRNDKDSGN-YDNRTHYDKESENF 355
Query: 337 WRDDSY-SHKEKYRPQREE 390
R++ + + K K +R+E
Sbjct: 356 KRNEGFITEKHKNEAKRDE 374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.314 0.129 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,450,357
Number of Sequences: 1393205
Number of extensions: 8463380
Number of successful extensions: 35696
Number of sequences better than 10.0: 959
Number of HSP's better than 10.0 without gapping: 27065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33402
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
