Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019106A_C02 KMC019106A_c02
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194900.1| Transcription factor II homolog; protein id: At... 160 7e-39
dbj|BAC42469.1| putative transcription factor II [Arabidopsis th... 159 2e-38
pir||A57694 transcription factor IID 30k chain - human 81 1e-14
ref|XP_215028.1| similar to Transcription initiation factor TFII... 77 1e-13
ref|NP_006275.1| TBP-related factor 10; TATA box binding protein... 77 1e-13
>ref|NP_194900.1| Transcription factor II homolog; protein id: At4g31720.1, supported
by cDNA: 25793., supported by cDNA: gi_13492647,
supported by cDNA: gi_13549155 [Arabidopsis thaliana]
gi|7488383|pir||T05098 transcription factor IID 30K
chain homolog F28M20.90 - Arabidopsis thaliana
gi|2072626|emb|CAA73389.1| hypothetical protein
[Arabidopsis thaliana] gi|3281856|emb|CAA19751.1|
Transcription factor II homolog [Arabidopsis thaliana]
gi|7270075|emb|CAB79890.1| Transcription factor II
homolog [Arabidopsis thaliana]
gi|13492648|gb|AAK28290.1|AF344879_1 putative
TBP-associated 15 kDa subunit protein [Arabidopsis
thaliana] gi|13549156|gb|AAK29671.1|AF352813_1 putative
TBP associated factor 15kDa subunit [Arabidopsis
thaliana] gi|21554584|gb|AAM63623.1| Transcription
factor II homolog [Arabidopsis thaliana]
Length = 134
Score = 160 bits (406), Expect = 7e-39
Identities = 81/95 (85%), Positives = 87/95 (91%)
Frame = -1
Query: 552 AKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKEKRLVLTM 373
AKSGFQCPDVRL RLVAVATQKFVA+VA DALQHCKAR A + KDK KQQK+KRLVLTM
Sbjct: 42 AKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTM 99
Query: 372 EDLSKALREYGVNLRHQEYFADSPSTGVDPATRDE 268
EDLSKALREYGVN++H EYFADSPSTG+DPATRDE
Sbjct: 100 EDLSKALREYGVNVKHPEYFADSPSTGMDPATRDE 134
>dbj|BAC42469.1| putative transcription factor II [Arabidopsis thaliana]
gi|28416879|gb|AAO42970.1| At4g31720 [Arabidopsis
thaliana]
Length = 134
Score = 159 bits (402), Expect = 2e-38
Identities = 80/95 (84%), Positives = 86/95 (90%)
Frame = -1
Query: 552 AKSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKEKRLVLTM 373
AKSGFQCPDVRL RLVAVATQKFVA+VA DALQHCKAR A + KDK KQQK+KRLVLTM
Sbjct: 42 AKSGFQCPDVRLIRLVAVATQKFVADVASDALQHCKARPAPVVKDK--KQQKDKRLVLTM 99
Query: 372 EDLSKALREYGVNLRHQEYFADSPSTGVDPATRDE 268
EDLSKALREYGVN++H EYFADSPSTG+DP TRDE
Sbjct: 100 EDLSKALREYGVNVKHPEYFADSPSTGMDPVTRDE 134
>pir||A57694 transcription factor IID 30k chain - human
Length = 219
Score = 80.9 bits (198), Expect = 1e-14
Identities = 35/79 (44%), Positives = 56/79 (70%)
Frame = -1
Query: 549 KSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKEKRLVLTME 370
++GF+ D R+ RL+++A QKF++++A DALQHCK + T R K +++++ LTME
Sbjct: 141 RAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMK-GTASGSSRSKSKQDRKYTLTME 199
Query: 369 DLSKALREYGVNLRHQEYF 313
DL+ AL EYG+N++ YF
Sbjct: 200 DLTPALSEYGINVKKPHYF 218
>ref|XP_215028.1| similar to Transcription initiation factor TFIID 30 kDa subunit
(TAFII-30) (TAFII30) [Rattus norvegicus]
Length = 127
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/79 (45%), Positives = 55/79 (69%)
Frame = -1
Query: 549 KSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKEKRLVLTME 370
++GF+ D R+ RL+++A QKF++++A DALQHCK + T R K K+++ LTME
Sbjct: 50 RAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMK-GTASGSSRSK-SKDRKYTLTME 107
Query: 369 DLSKALREYGVNLRHQEYF 313
DL+ AL EYG+N++ YF
Sbjct: 108 DLTPALSEYGINVKKPHYF 126
>ref|NP_006275.1| TBP-related factor 10; TATA box binding protein (TBP)-associated
factor, RNA polymerase II; TAF10 RNA polymerase II, TATA
box binding protein (TBP)-associated factor, 30 kD; TATA
box binding protein (TBP)-associated factor, RNA
polymerase II, H, 30kD; transcription initiation factor
TFIID 30 kD subunit [Homo sapiens]
gi|3024688|sp|Q12962|T2D8_HUMAN Transcription initiation
factor TFIID 30 kDa subunit (TAFII-30) (TAFII30)
gi|562077|gb|AAA62230.1| TATA-binding protein associated
factor 30 kDa subunit gi|2193966|gb|AAB61242.1|
TATA-binding protein associated factor 30 kDa subunit
gi|15082354|gb|AAH12088.1|AAH12088 Similar to TATA box
binding protein (TBP)-associated factor, RNA polymerase
II, H, 30kD [Homo sapiens]
gi|20162527|gb|AAM14627.1|AF498312_1 TAF10 RNA
polymerase II, TATA box binding protein (TBP)-associated
factor, 30 kD [Homo sapiens]
Length = 218
Score = 77.4 bits (189), Expect = 1e-13
Identities = 36/79 (45%), Positives = 55/79 (69%)
Frame = -1
Query: 549 KSGFQCPDVRLTRLVAVATQKFVAEVAGDALQHCKARQATIPKDKRDKQQKEKRLVLTME 370
++GF+ D R+ RL+++A QKF++++A DALQHCK + T R K K+++ LTME
Sbjct: 141 RAGFEASDPRIIRLISLAAQKFISDIANDALQHCKMK-GTASGSSRSK-SKDRKYTLTME 198
Query: 369 DLSKALREYGVNLRHQEYF 313
DL+ AL EYG+N++ YF
Sbjct: 199 DLTPALSEYGINVKKPHYF 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,067,258
Number of Sequences: 1393205
Number of extensions: 9081084
Number of successful extensions: 28008
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 26942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27974
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
