Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019104A_C01 KMC019104A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF02902.1|AF065604_2 BC2-ORF2/A-HLG [Giardia intestinalis] 37 0.18
ref|NP_523863.1| gooseberry CG3388-PA gi|123376|sp|P09082|GSB_DR... 36 0.31
gb|AAF02905.1|AF065605_2 BC2-ORF2/B [Giardia intestinalis] 36 0.31
ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|... 36 0.41
ref|NP_647902.1| CG15021-PA [Drosophila melanogaster] gi|1794538... 36 0.41
>gb|AAF02902.1|AF065604_2 BC2-ORF2/A-HLG [Giardia intestinalis]
Length = 377
Score = 37.0 bits (84), Expect = 0.18
Identities = 22/74 (29%), Positives = 38/74 (50%), Gaps = 1/74 (1%)
Frame = -1
Query: 224 LDEIFVWEFQLHRNFLIWLVDSFH-SPIRQLLYFVNLSFIWDRFSCHYEFAKELLSS*GL 48
+ + F+WE LH+ L+W V SF+ SP L F+ L W F C E + +S
Sbjct: 245 IGDCFLWEIPLHKCMLLWNVHSFYKSPGPLRLLFIILK--WSCFKCEQEALEFHISCRQS 302
Query: 47 NPKRIAASKKRKKK 6
+ +++K+K++
Sbjct: 303 RYAHLKSARKKKEE 316
>ref|NP_523863.1| gooseberry CG3388-PA gi|123376|sp|P09082|GSB_DROME Gooseberry
protein (Gooseberry distal protein) (BSH9)
gi|280602|pir||A43698 paired box transcription factor
BSH9 - fruit fly (Drosophila melanogaster)
gi|10727095|gb|AAF47315.2| CG3388-PA [Drosophila
melanogaster]
Length = 427
Score = 36.2 bits (82), Expect = 0.31
Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Frame = -3
Query: 582 PSFAPPTTAPGST----AAPASNGAPSMVSSAMYQPNPSAPSSGGYDNYNA 442
PSFAP +T+ G+T AAPA N S+ SS + PSSG Y+N+ A
Sbjct: 250 PSFAPTSTSFGATPTTSAAPAPNMGMSLYSSQSW------PSSGAYENHAA 294
>gb|AAF02905.1|AF065605_2 BC2-ORF2/B [Giardia intestinalis]
Length = 373
Score = 36.2 bits (82), Expect = 0.31
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -1
Query: 224 LDEIFVWEFQLHRNFLIWLVDSFH---SPIRQLLYFVNLSFIWDRFSCHYE 81
+ + F+WE LHR L+W V SF+ P R LL + W F+C E
Sbjct: 242 IGDCFLWEIPLHRCMLLWNVHSFYMSPGPFRLLLMILK----WRCFNCEQE 288
>ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|gb|AAF55584.1|
CG7709-PA [Drosophila melanogaster]
Length = 950
Score = 35.8 bits (81), Expect = 0.41
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Frame = -3
Query: 573 APPTTAPGSTAAPASN-GAPSMVSSAMYQPNPS-APSSGGYDNYNANAQAPDGNH*P 409
APP+++ G+ A P+S+ GAPS SS+ P P+ AP S +Y A QAP ++ P
Sbjct: 427 APPSSSYGAPAPPSSSYGAPSAPSSSYGPPKPAPAPPS---SSYGAPPQAPVSSYLP 480
Score = 35.4 bits (80), Expect = 0.53
Identities = 21/55 (38%), Positives = 27/55 (48%), Gaps = 3/55 (5%)
Frame = -3
Query: 579 SFAPPTTAPG---STAAPASNGAPSMVSSAMYQPNPSAPSSGGYDNYNANAQAPD 424
S+ P+T G S+A +S AP S+ P PSAPS YN +Q PD
Sbjct: 879 SYGAPSTGSGHSFSSAPSSSYSAPPAGGSSSSGPYPSAPSQDSGYEYNGPSQVPD 933
Score = 32.3 bits (72), Expect = 4.5
Identities = 18/41 (43%), Positives = 24/41 (57%), Gaps = 2/41 (4%)
Frame = -3
Query: 582 PSFAPPTTAPGSTAAPASNGAP--SMVSSAMYQPNPSAPSS 466
P APP+ + G+ A P+S P S SS+ P P+APSS
Sbjct: 251 PKSAPPSQSYGAPAPPSSKYGPPKSAPSSSYGAPRPAAPSS 291
>ref|NP_647902.1| CG15021-PA [Drosophila melanogaster] gi|17945382|gb|AAL48746.1|
RE17165p [Drosophila melanogaster]
gi|23093008|gb|AAF47902.2| CG15021-PA [Drosophila
melanogaster]
Length = 420
Score = 35.8 bits (81), Expect = 0.41
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = -3
Query: 573 APPTTAPGSTAAPASNGAPSMVSSAMYQPNPSAPSSGGYDNYNANAQAP 427
APP APG T P P+ YQP P +P + Y AP
Sbjct: 318 APPAPAPGPTYQPRPPAPPAPAPGPTYQPRPPSPPAPPAPTYQPQPPAP 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,696,130
Number of Sequences: 1393205
Number of extensions: 11143710
Number of successful extensions: 41812
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 35165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40952
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
