Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019103A_C01 KMC019103A_c01
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00059422.1| hypothetical protein [Thermobifida fusca] 31 6.2
ref|NP_212587.1| conserved hypothetical protein [Borrelia burgdo... 31 6.2
gb|AAK71281.1|AF387640_27 keto acyl carrier protein reductase [C... 31 6.2
ref|NP_051016.1| structural protein [Periplaneta fuliginosa dens... 31 8.1
dbj|BAA82965.1| structural protein [Periplaneta fuliginosa denso... 31 8.1
>gb|ZP_00059422.1| hypothetical protein [Thermobifida fusca]
Length = 544
Score = 31.2 bits (69), Expect = 6.2
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1
Query: 465 RSMVVSSLKLQGGACQRRKWCRSGRG 388
RS + L G+ QR++WCRSGRG
Sbjct: 19 RSPAAAGLPRCPGSLQRQRWCRSGRG 44
>ref|NP_212587.1| conserved hypothetical protein [Borrelia burgdorferi]
gi|7444701|pir||D70156 conserved hypothetical protein
BB0453 - Lyme disease spirochete
gi|2688363|gb|AAC66816.1| conserved hypothetical protein
[Borrelia burgdorferi B31]
Length = 280
Score = 31.2 bits (69), Expect = 6.2
Identities = 11/30 (36%), Positives = 22/30 (72%)
Frame = -1
Query: 117 LIQEWISYFILGLVGYGIKLFSRLVISFFI 28
+ Q++ +Y I G+VGYG+K+ +V+ +F+
Sbjct: 7 IFQDYFNYIIEGVVGYGLKVSIAIVLWYFL 36
>gb|AAK71281.1|AF387640_27 keto acyl carrier protein reductase [Coxiella burnetii]
Length = 249
Score = 31.2 bits (69), Expect = 6.2
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +3
Query: 240 CKLIE*NSYSSIQFKQKEIPRDIDRDVSQFIQHEASEAES 359
CKL++ N S +Q K IP+ +DR S I H S A+S
Sbjct: 102 CKLVDINLLSGVQINNKLIPKMVDRQ-SGVIIHVGSTADS 140
>ref|NP_051016.1| structural protein [Periplaneta fuliginosa densovirus]
gi|6120123|gb|AAF04300.1| structural protein
[Periplaneta fuliginosa densovirus]
Length = 242
Score = 30.8 bits (68), Expect = 8.1
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 228 SNRMCKLIE*NSYSSIQFKQKEIPRDIDRDVSQFIQHEASEAESTVDAAE*VVLL 392
S R+ +L N+YS I+ E+P +D DV I+ E S + S +A E LL
Sbjct: 47 SERVRELTRPNNYSVIEGSDIELPISVDDDVHIPIEEETSFSVSVPEATETTGLL 101
>dbj|BAA82965.1| structural protein [Periplaneta fuliginosa densovirus]
Length = 291
Score = 30.8 bits (68), Expect = 8.1
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 228 SNRMCKLIE*NSYSSIQFKQKEIPRDIDRDVSQFIQHEASEAESTVDAAE*VVLL 392
S R+ +L N+YS I+ E+P +D DV I+ E S + S +A E LL
Sbjct: 96 SERVRELTRPNNYSVIEGSDIELPISVDDDVHIPIEEETSFSVSVPEATETTGLL 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,998,814
Number of Sequences: 1393205
Number of extensions: 7380550
Number of successful extensions: 15679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15665
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
