Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019098A_C01 KMC019098A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF78903.1|AF248055_1 proline-rich protein [Glycine max] 82 3e-15
pir||T09593 CIC protein, cold-inducible - alfalfa gi|508304|gb|A... 80 2e-14
dbj|BAB16431.1| P-rich protein Nt-SubC29 [Nicotiana tabacum] 77 1e-13
pir||S42552 proline-rich protein - rape gi|545029|gb|AAC60566.1|... 77 1e-13
pir||S53012 root-specific protein RCc3 - rice gi|786132|gb|AAA65... 75 5e-13
>gb|AAF78903.1|AF248055_1 proline-rich protein [Glycine max]
Length = 126
Score = 82.4 bits (202), Expect = 3e-15
Identities = 38/44 (86%), Positives = 41/44 (92%)
Frame = -3
Query: 557 DLEAALCLCTAIKGNVLGLNLNVPITLSLILSACQKTVPPGFQC 426
D EAALCLCTAIK NVLG+NLNVPITLS++LSACQKTVP GFQC
Sbjct: 82 DSEAALCLCTAIKANVLGINLNVPITLSVLLSACQKTVPAGFQC 125
>pir||T09593 CIC protein, cold-inducible - alfalfa gi|508304|gb|AAA32650.1|
bimodular protein [Medicago sativa]
Length = 166
Score = 79.7 bits (195), Expect = 2e-14
Identities = 34/44 (77%), Positives = 42/44 (95%)
Frame = -3
Query: 557 DLEAALCLCTAIKGNVLGLNLNVPITLSLILSACQKTVPPGFQC 426
DL+AA+CLCTAIK N+LG+NLNVPITLSL+LSAC+K++P GFQC
Sbjct: 122 DLDAAVCLCTAIKANILGINLNVPITLSLLLSACEKSIPNGFQC 165
>dbj|BAB16431.1| P-rich protein Nt-SubC29 [Nicotiana tabacum]
Length = 130
Score = 77.4 bits (189), Expect = 1e-13
Identities = 33/45 (73%), Positives = 40/45 (88%)
Frame = -3
Query: 557 DLEAALCLCTAIKGNVLGLNLNVPITLSLILSACQKTVPPGFQCP 423
DLEAA+CLCTAIK N+LG+NLNVP++LSL+L+ C K VP GFQCP
Sbjct: 86 DLEAAICLCTAIKANILGINLNVPLSLSLLLNVCGKQVPSGFQCP 130
>pir||S42552 proline-rich protein - rape gi|545029|gb|AAC60566.1| proline-rich
SAC51 [Brassica napus]
Length = 147
Score = 77.0 bits (188), Expect = 1e-13
Identities = 32/44 (72%), Positives = 39/44 (87%)
Frame = -3
Query: 557 DLEAALCLCTAIKGNVLGLNLNVPITLSLILSACQKTVPPGFQC 426
DLEAA CLCTA+K N+LG+NLN+PI+LSL+L+ C K VPPGFQC
Sbjct: 104 DLEAAACLCTALKANILGINLNIPISLSLLLNVCSKKVPPGFQC 147
>pir||S53012 root-specific protein RCc3 - rice gi|786132|gb|AAA65513.1| RCc3
Length = 133
Score = 75.1 bits (183), Expect = 5e-13
Identities = 33/44 (75%), Positives = 40/44 (90%)
Frame = -3
Query: 557 DLEAALCLCTAIKGNVLGLNLNVPITLSLILSACQKTVPPGFQC 426
DLEAA+CLCTAI+GN+LG+NLN+PI LSLIL+ C KTVP GF+C
Sbjct: 90 DLEAAVCLCTAIRGNILGINLNLPIDLSLILNYCGKTVPTGFKC 133
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,654,398
Number of Sequences: 1393205
Number of extensions: 8296421
Number of successful extensions: 18231
Number of sequences better than 10.0: 116
Number of HSP's better than 10.0 without gapping: 17744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18196
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
