Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019096A_C01 KMC019096A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568306.1| putative protein; protein id: At5g14910.1, supp... 84 1e-15
pir||T51436 hypothetical protein F2G14_30 - Arabidopsis thaliana... 76 3e-13
ref|XP_109806.1| similar to hypothetical protein MGC4172 [Homo s... 33 1.7
ref|NP_010727.1| Loss of rDNA silencing; Lrs4p [Saccharomyces ce... 32 3.8
pir||S51908 cryptogene protein G1(ND9) - Leishmania tarentolae (... 32 3.8
>ref|NP_568306.1| putative protein; protein id: At5g14910.1, supported by cDNA:
21085., supported by cDNA: gi_14517525, supported by
cDNA: gi_15810112 [Arabidopsis thaliana]
gi|14517526|gb|AAK62653.1| AT5g14910/F2G14_30
[Arabidopsis thaliana] gi|15810113|gb|AAL06982.1|
AT5g14910/F2G14_30 [Arabidopsis thaliana]
gi|21554207|gb|AAM63286.1| unknown [Arabidopsis
thaliana]
Length = 178
Score = 83.6 bits (205), Expect = 1e-15
Identities = 42/54 (77%), Positives = 49/54 (89%)
Frame = -3
Query: 538 DGVTNLRVHLFEGLASLELEKQTTVQATGVASSLVETIQGLGFKLQTLNLSFDD 377
DGV+NL+V + EG+A +EL KQTTVQATGVAS+LVETIQG GFKLQTLNLSF+D
Sbjct: 119 DGVSNLKVQVSEGVAVVELLKQTTVQATGVASNLVETIQGAGFKLQTLNLSFED 172
>pir||T51436 hypothetical protein F2G14_30 - Arabidopsis thaliana
gi|9755658|emb|CAC01810.1| putative protein [Arabidopsis
thaliana]
Length = 175
Score = 75.9 bits (185), Expect = 3e-13
Identities = 40/54 (74%), Positives = 47/54 (86%)
Frame = -3
Query: 538 DGVTNLRVHLFEGLASLELEKQTTVQATGVASSLVETIQGLGFKLQTLNLSFDD 377
DGV+NL+V + EG+A +E QTTVQATGVAS+LVETIQG GFKLQTLNLSF+D
Sbjct: 119 DGVSNLKVQVSEGVAVVE---QTTVQATGVASNLVETIQGAGFKLQTLNLSFED 169
>ref|XP_109806.1| similar to hypothetical protein MGC4172 [Homo sapiens] [Mus
musculus] gi|29243902|ref|NP_808232.1| hypothetical
protein MGC18716 [Mus musculus]
gi|18490590|gb|AAH22224.1| Similar to hypothetical
protein MGC4172 [Mus musculus]
Length = 181
Score = 33.5 bits (75), Expect = 1.7
Identities = 27/69 (39%), Positives = 32/69 (46%)
Frame = -3
Query: 511 LFEGLASLELEKQTTVQATGVASSLVETIQGLGFKLQTLNLSFDDAEVAAA*TKCAGLRP 332
L EGL LE QT ++AT ++ LVET FKL D E AA LRP
Sbjct: 97 LTEGLRQELLEAQTHIRATCISPGLVET--QFAFKLH----DKDPGEAAATYEHIKCLRP 150
Query: 331 LEFEEGTIY 305
+ E IY
Sbjct: 151 EDVAEAVIY 159
>ref|NP_010727.1| Loss of rDNA silencing; Lrs4p [Saccharomyces cerevisiae]
gi|2131493|pir||S69719 hypothetical protein YDR439w -
yeast (Saccharomyces cerevisiae)
gi|927701|gb|AAB64867.1| Ydr439wp; CAI: 0.10
[Saccharomyces cerevisiae]
Length = 347
Score = 32.3 bits (72), Expect = 3.8
Identities = 20/63 (31%), Positives = 30/63 (46%)
Frame = +2
Query: 65 KI*KKKRTDEAFYHQKAVSVEAFYHYILLKFFQEIITTIKKFKQHPPNTKKDNQHP*SKP 244
K+ ++ +A Y K S +AF + LK E I+ K K+ P+T +D Q SK
Sbjct: 75 KLLSVQKNQKALYQSKLSSKDAFIDDLKLKLKVEQISVDKHNKERTPSTGRDEQQRNSKA 134
Query: 245 IQT 253
T
Sbjct: 135 AHT 137
>pir||S51908 cryptogene protein G1(ND9) - Leishmania tarentolae (strain LEM125)
Length = 196
Score = 32.3 bits (72), Expect = 3.8
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = -3
Query: 226 LVIFFCIWRVLLKFLYCCYYFLEKF*EYVMIKGFN*YSFLMVESFICSFFFLNLNFVLFY 47
L++F C++ +LL F CC + F + + Y F+ F F F NL F L Y
Sbjct: 11 LIMFRCVFVLLLFFCLCCRWVFLCFVDCSFVFF---YLFVCFFLFFVMFLFFNLWFFLLY 67
Query: 46 *TCSTS*EVDFKGY 5
C +DF G+
Sbjct: 68 --CLDLFCIDFCGF 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,560,643
Number of Sequences: 1393205
Number of extensions: 8824196
Number of successful extensions: 18056
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18037
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
