Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019085A_C01 KMC019085A_c01
(791 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563841.1| expressed protein; protein id: At1g09310.1, sup... 102 8e-21
ref|NP_564720.1| expressed protein; protein id: At1g56580.1, sup... 97 3e-19
dbj|BAA96147.1| unnamed protein product [Oryza sativa (japonica ... 81 2e-14
dbj|BAB86575.1| OSJNBb0032K15.16 [Oryza sativa (japonica cultiva... 75 1e-12
dbj|BAC10822.1| hypothetical protein~similar to Arabidopsis thal... 72 9e-12
>ref|NP_563841.1| expressed protein; protein id: At1g09310.1, supported by cDNA:
11073., supported by cDNA: gi_13194795, supported by
cDNA: gi_15028182, supported by cDNA: gi_19310812
[Arabidopsis thaliana] gi|25402533|pir||B86226
hypothetical protein [imported] - Arabidopsis thaliana
gi|4337175|gb|AAD18096.1| ESTs gb|T20589, gb|T04648,
gb|AA597906, gb|T04111, gb|R84180, gb|R65428, gb|T44439,
gb|T76570, gb|R90004, gb|T45020, gb|T42457, gb|T20921,
gb|AA042762 and gb|AA720210 come from this gene.
[Arabidopsis thaliana]
gi|13194796|gb|AAK15560.1|AF348589_1 unknown protein
[Arabidopsis thaliana] gi|15028183|gb|AAK76588.1|
unknown protein [Arabidopsis thaliana]
gi|19310813|gb|AAL85137.1| unknown protein [Arabidopsis
thaliana] gi|21536763|gb|AAM61095.1| unknown
[Arabidopsis thaliana]
Length = 179
Score = 102 bits (253), Expect = 8e-21
Identities = 54/94 (57%), Positives = 63/94 (66%)
Frame = -1
Query: 788 TEVTAYVEVGKIKKLTGVKTKELLVWITLNDIYVDNPPTGKITFQTPAGLYRTFPVSAFE 609
TEVTA VE GKIKKLTGVK KELL+W+T+N+IY + PPT KITF+TP L RTFPV+AF
Sbjct: 79 TEVTAIVETGKIKKLTGVKAKELLIWVTINEIYTEEPPT-KITFKTPTTLSRTFPVTAFI 137
Query: 608 IKEEKPVTGVVKEEENKHVKEAVGAAAGAVQVKE 507
+ EE KEE K A AV +KE
Sbjct: 138 VPEEPAKEEPAKEEPAKEKSSEATEAKEAVAIKE 171
>ref|NP_564720.1| expressed protein; protein id: At1g56580.1, supported by cDNA:
gi_16648668, supported by cDNA: gi_20856238 [Arabidopsis
thaliana] gi|25404133|pir||E96607 hypothetical protein
F25P12.97 [imported] - Arabidopsis thaliana
gi|9954754|gb|AAG09105.1|AC009323_16 Unknown protein
[Arabidopsis thaliana] gi|16648669|gb|AAL25527.1|
At1g56580/F25P12_18 [Arabidopsis thaliana]
gi|20856239|gb|AAM26655.1| At1g56580/F25P12_18
[Arabidopsis thaliana]
Length = 166
Score = 97.1 bits (240), Expect = 3e-19
Identities = 54/86 (62%), Positives = 63/86 (72%), Gaps = 2/86 (2%)
Frame = -1
Query: 791 ATEVTAYVEVGKIKKLTGVKTKELLVWITLNDIYVDNP-PTGKITFQTPAGLYRTFPVSA 615
ATEV A VEVGKIKKLTGVK KELL+W+TLN++ ++ P +GKI F+TP GL RTFPVSA
Sbjct: 78 ATEVIAQVEVGKIKKLTGVKAKELLIWVTLNELVLEQPTSSGKINFRTPTGLSRTFPVSA 137
Query: 614 FEIKE-EKPVTGVVKEEENKHVKEAV 540
F + E EKP T K VKEAV
Sbjct: 138 FVVPEVEKPAT--EKNNGTTEVKEAV 161
>dbj|BAA96147.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|8096617|dbj|BAA96189.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 167
Score = 81.3 bits (199), Expect = 2e-14
Identities = 41/88 (46%), Positives = 57/88 (64%)
Frame = -1
Query: 791 ATEVTAYVEVGKIKKLTGVKTKELLVWITLNDIYVDNPPTGKITFQTPAGLYRTFPVSAF 612
A EVTA+VE ++K++TG KTKELL+W++L+D+++D KITF+TP GL RT+PV AF
Sbjct: 79 AAEVTAFVEDRRMKRVTGAKTKELLIWVSLSDMFIDKDDASKITFKTPTGLGRTYPVDAF 138
Query: 611 EIKEEKPVTGVVKEEENKHVKEAVGAAA 528
KE++ K A AAA
Sbjct: 139 -----------AKEDDGKGKVPAAAAAA 155
>dbj|BAB86575.1| OSJNBb0032K15.16 [Oryza sativa (japonica cultivar-group)]
gi|20161501|dbj|BAB90424.1| OSJNBb0006H05.1 [Oryza
sativa (japonica cultivar-group)]
Length = 136
Score = 75.1 bits (183), Expect = 1e-12
Identities = 35/58 (60%), Positives = 45/58 (77%)
Frame = -1
Query: 785 EVTAYVEVGKIKKLTGVKTKELLVWITLNDIYVDNPPTGKITFQTPAGLYRTFPVSAF 612
E+T YV+ IKKL GVK KEL++W +N+I VDNPPTGKI F++ AG+ +TFPV AF
Sbjct: 75 EITGYVKAKCIKKLKGVKAKELMLWPPVNEITVDNPPTGKIHFKSLAGVTKTFPVEAF 132
>dbj|BAC10822.1| hypothetical protein~similar to Arabidopsis thaliana chromosome3,
At3g50430 [Oryza sativa (japonica cultivar-group)]
Length = 747
Score = 72.0 bits (175), Expect = 9e-12
Identities = 34/64 (53%), Positives = 48/64 (74%)
Frame = -1
Query: 791 ATEVTAYVEVGKIKKLTGVKTKELLVWITLNDIYVDNPPTGKITFQTPAGLYRTFPVSAF 612
A EVTA+VE GK+KK+TGVKTKELL+W+++ ++YV + K+TF+T GL TF +AF
Sbjct: 684 AGEVTAFVEKGKLKKITGVKTKELLLWLSVVEVYVADASPEKVTFKTGTGLSDTFDATAF 743
Query: 611 EIKE 600
+ E
Sbjct: 744 ALGE 747
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 633,119,626
Number of Sequences: 1393205
Number of extensions: 13645942
Number of successful extensions: 39506
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 36506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39208
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39775824764
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
