Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019083A_C01 KMC019083A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10340.1| gb|AAF31026.1~gene_id:K21P3.10~similar to unknow... 98 7e-20
ref|NP_199733.2| putative protein; protein id: At5g49220.1, supp... 95 8e-19
ref|NP_172956.2| hypothetical protein; protein id: At1g15030.1, ... 94 1e-18
gb|AAK96769.1| Unknown protein [Arabidopsis thaliana] 86 3e-16
ref|NP_565257.1| predicted by genscan and genefinder; protein id... 86 5e-16
>dbj|BAB10340.1| gb|AAF31026.1~gene_id:K21P3.10~similar to unknown protein
[Arabidopsis thaliana]
Length = 357
Score = 98.2 bits (243), Expect = 7e-20
Identities = 50/102 (49%), Positives = 66/102 (64%)
Frame = -1
Query: 594 PTLQSLNACFLTFHSLSTALQSSNTDGLHIHYSRGRERSSKISLPIFGLAHNKFKISVWD 415
PTLQ+L+ACFLTFHSLSTA S H + S+K+ LP FGLA K K+SVW+
Sbjct: 262 PTLQNLDACFLTFHSLSTAPPQSK------HPMTDSQPSTKLPLPTFGLASYKLKVSVWN 315
Query: 414 PEGVPECQKANSLSRAAENWLRLLRVNHPDYNFFMTHYTYLR 289
+ E QK SL +AA+ WL+ L+V+HPDY FF ++ +R
Sbjct: 316 QNRIQESQKMTSLLQAADKWLKRLQVDHPDYRFFTSNSPQMR 357
>ref|NP_199733.2| putative protein; protein id: At5g49220.1, supported by cDNA:
gi_17381185, supported by cDNA: gi_20465842 [Arabidopsis
thaliana] gi|17381186|gb|AAL36405.1| unknown protein
[Arabidopsis thaliana] gi|20465843|gb|AAM20026.1|
unknown protein [Arabidopsis thaliana]
Length = 409
Score = 94.7 bits (234), Expect = 8e-19
Identities = 49/102 (48%), Positives = 65/102 (63%)
Frame = -1
Query: 594 PTLQSLNACFLTFHSLSTALQSSNTDGLHIHYSRGRERSSKISLPIFGLAHNKFKISVWD 415
PTLQ+L+ACFLTFHSLSTA S + S+K+ LP FGLA K K+SVW+
Sbjct: 314 PTLQNLDACFLTFHSLSTAPPQSAMG------CSDSQPSTKLPLPTFGLASYKLKVSVWN 367
Query: 414 PEGVPECQKANSLSRAAENWLRLLRVNHPDYNFFMTHYTYLR 289
+ E QK SL +AA+ WL+ L+V+HPDY FF ++ +R
Sbjct: 368 QNRIQESQKMTSLLQAADKWLKRLQVDHPDYRFFTSNSPQMR 409
>ref|NP_172956.2| hypothetical protein; protein id: At1g15030.1, supported by cDNA:
gi_17979166, supported by cDNA: gi_20259122 [Arabidopsis
thaliana] gi|25373433|pir||H86283 protein T15D22.8
[imported] - Arabidopsis thaliana
gi|6899649|gb|AAF31026.1|AC012189_8 T15D22.8
[Arabidopsis thaliana] gi|17979167|gb|AAL49779.1|
unknown protein [Arabidopsis thaliana]
gi|20259123|gb|AAM14277.1| unknown protein [Arabidopsis
thaliana]
Length = 360
Score = 94.4 bits (233), Expect = 1e-18
Identities = 48/94 (51%), Positives = 60/94 (63%)
Frame = -1
Query: 594 PTLQSLNACFLTFHSLSTALQSSNTDGLHIHYSRGRERSSKISLPIFGLAHNKFKISVWD 415
PTL+ L+ACFLT+HSL T Q +H + RE K+ LP+FGLA K + SVW
Sbjct: 264 PTLKDLDACFLTYHSLHTPFQGPGVTTGSMHVVQPRESVEKMELPVFGLASYKLRGSVWT 323
Query: 414 PEGVPECQKANSLSRAAENWLRLLRVNHPDYNFF 313
G Q ANSL +AA+NWLRL +VNHPD+ FF
Sbjct: 324 SFGGSGHQLANSLFQAADNWLRLRQVNHPDFIFF 357
>gb|AAK96769.1| Unknown protein [Arabidopsis thaliana]
Length = 394
Score = 86.3 bits (212), Expect = 3e-16
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Frame = -1
Query: 591 TLQSLNACFLTFHSLSTALQ-SSNTDGLHIHYSRGRERSSKISLPIFGLAHNKFKISVWD 415
+LQ+L+ACFLTFHSLST + +SN +G S S+K+ LP FGLA KFK+S W
Sbjct: 294 SLQNLDACFLTFHSLSTPCRGTSNEEG---QSSSKSVASAKLPLPTFGLASYKFKLSEWS 350
Query: 414 PEG-VPECQKANSLSRAAENWLRLLRVNHPDYNFFMTH 304
PE V E Q+ +L R AE WLR L+V PD+ F++H
Sbjct: 351 PESDVDENQRVGTLLRTAEEWLRRLKVILPDFRHFISH 388
>ref|NP_565257.1| predicted by genscan and genefinder; protein id: At2g01260.1,
supported by cDNA: 8949. [Arabidopsis thaliana]
gi|20197590|gb|AAD14526.2| predicted by genscan and
genefinder [Arabidopsis thaliana]
Length = 369
Score = 85.5 bits (210), Expect = 5e-16
Identities = 45/94 (47%), Positives = 62/94 (65%)
Frame = -1
Query: 594 PTLQSLNACFLTFHSLSTALQSSNTDGLHIHYSRGRERSSKISLPIFGLAHNKFKISVWD 415
PTL+ L+ACFLT+HSL T+ ++ + ++ RE S K+SLP+FGLA KF+ S+W
Sbjct: 275 PTLKDLDACFLTYHSLHTSFGGEGSEQ-SMSLTQPRE-SEKMSLPVFGLASYKFRGSLWT 332
Query: 414 PEGVPECQKANSLSRAAENWLRLLRVNHPDYNFF 313
P G E Q NSL +AA+ WL V+HPD+ FF
Sbjct: 333 PIGGSEHQLVNSLFQAADKWLHSCHVSHPDFLFF 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,591,122
Number of Sequences: 1393205
Number of extensions: 10867366
Number of successful extensions: 23021
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 22486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22994
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
