Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019059A_C01 KMC019059A_c01
(536 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN63591.1|AF432225_1 GSK-3-like protein MsK4 [Medicago sativa] 125 7e-37
pir||F86232 hypothetical protein [imported] - Arabidopsis thalia... 122 2e-35
sp|Q39019|KSGK_ARATH Shaggy-related protein kinase kappa (ASK-ka... 122 2e-35
ref|NP_172455.1| shaggy-like protien kinase, kappa; protein id: ... 122 2e-35
emb|CAA68872.1| shaggy-like kinase kappa [Arabidopsis thaliana] 122 2e-35
>gb|AAN63591.1|AF432225_1 GSK-3-like protein MsK4 [Medicago sativa]
Length = 432
Score = 125 bits (314), Expect(2) = 7e-37
Identities = 56/59 (94%), Positives = 56/59 (94%)
Frame = -3
Query: 534 QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPTPRLPNGRPLPPLFNFNP 358
QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDP RLPNGRPLPPLFNF P
Sbjct: 344 QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPNTRLPNGRPLPPLFNFKP 402
Score = 50.1 bits (118), Expect(2) = 7e-37
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = -1
Query: 350 LSGIPSDVIHRLIPEHARSTNLFMALHS 267
LSGIP DVI+RLIPEHAR NLFMALH+
Sbjct: 405 LSGIPPDVINRLIPEHARKQNLFMALHT 432
>pir||F86232 hypothetical protein [imported] - Arabidopsis thaliana
gi|2160191|gb|AAB60754.1| Identical to A. thaliana AtK-1
(gb|X79279). [Arabidopsis thaliana]
Length = 447
Score = 122 bits (305), Expect(2) = 2e-35
Identities = 54/59 (91%), Positives = 55/59 (92%)
Frame = -3
Query: 534 QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPTPRLPNGRPLPPLFNFNP 358
QKRLPPEAVDL+CRFFQYSPNLRCTALEACIHP FDELRDP RLPNGRPLPPLFNF P
Sbjct: 359 QKRLPPEAVDLLCRFFQYSPNLRCTALEACIHPLFDELRDPNTRLPNGRPLPPLFNFKP 417
Score = 48.5 bits (114), Expect(2) = 2e-35
Identities = 20/28 (71%), Positives = 25/28 (88%)
Frame = -1
Query: 350 LSGIPSDVIHRLIPEHARSTNLFMALHS 267
LSGIP ++++RL+PEHAR NLFMALHS
Sbjct: 420 LSGIPPEIVNRLVPEHARKQNLFMALHS 447
>sp|Q39019|KSGK_ARATH Shaggy-related protein kinase kappa (ASK-kappa) (AtK-1)
gi|1076387|pir||S51938 protein kinase AtK-1 (EC 2.7.1.-)
- Arabidopsis thaliana gi|717180|emb|CAA55866.1| protein
kinase homologous to shaggy and glycogen synthase
kinase-3 [Arabidopsis thaliana]
Length = 421
Score = 122 bits (305), Expect(2) = 2e-35
Identities = 54/59 (91%), Positives = 55/59 (92%)
Frame = -3
Query: 534 QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPTPRLPNGRPLPPLFNFNP 358
QKRLPPEAVDL+CRFFQYSPNLRCTALEACIHP FDELRDP RLPNGRPLPPLFNF P
Sbjct: 333 QKRLPPEAVDLLCRFFQYSPNLRCTALEACIHPLFDELRDPNTRLPNGRPLPPLFNFKP 391
Score = 48.5 bits (114), Expect(2) = 2e-35
Identities = 20/28 (71%), Positives = 25/28 (88%)
Frame = -1
Query: 350 LSGIPSDVIHRLIPEHARSTNLFMALHS 267
LSGIP ++++RL+PEHAR NLFMALHS
Sbjct: 394 LSGIPPEIVNRLVPEHARKQNLFMALHS 421
>ref|NP_172455.1| shaggy-like protien kinase, kappa; protein id: At1g09840.1,
supported by cDNA: gi_20260175 [Arabidopsis thaliana]
gi|20260176|gb|AAM12986.1| shaggy-like protien kinase,
kappa [Arabidopsis thaliana] gi|23197848|gb|AAN15451.1|
shaggy-like protien kinase, kappa [Arabidopsis thaliana]
Length = 421
Score = 122 bits (305), Expect(2) = 2e-35
Identities = 54/59 (91%), Positives = 55/59 (92%)
Frame = -3
Query: 534 QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPTPRLPNGRPLPPLFNFNP 358
QKRLPPEAVDL+CRFFQYSPNLRCTALEACIHP FDELRDP RLPNGRPLPPLFNF P
Sbjct: 333 QKRLPPEAVDLLCRFFQYSPNLRCTALEACIHPLFDELRDPNTRLPNGRPLPPLFNFKP 391
Score = 48.5 bits (114), Expect(2) = 2e-35
Identities = 20/28 (71%), Positives = 25/28 (88%)
Frame = -1
Query: 350 LSGIPSDVIHRLIPEHARSTNLFMALHS 267
LSGIP ++++RL+PEHAR NLFMALHS
Sbjct: 394 LSGIPPEIVNRLVPEHARKQNLFMALHS 421
>emb|CAA68872.1| shaggy-like kinase kappa [Arabidopsis thaliana]
Length = 375
Score = 122 bits (305), Expect(2) = 2e-35
Identities = 54/59 (91%), Positives = 55/59 (92%)
Frame = -3
Query: 534 QKRLPPEAVDLVCRFFQYSPNLRCTALEACIHPFFDELRDPTPRLPNGRPLPPLFNFNP 358
QKRLPPEAVDL+CRFFQYSPNLRCTALEACIHP FDELRDP RLPNGRPLPPLFNF P
Sbjct: 287 QKRLPPEAVDLLCRFFQYSPNLRCTALEACIHPLFDELRDPNTRLPNGRPLPPLFNFKP 345
Score = 48.5 bits (114), Expect(2) = 2e-35
Identities = 20/28 (71%), Positives = 25/28 (88%)
Frame = -1
Query: 350 LSGIPSDVIHRLIPEHARSTNLFMALHS 267
LSGIP ++++RL+PEHAR NLFMALHS
Sbjct: 348 LSGIPPEIVNRLVPEHARKQNLFMALHS 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,072,306
Number of Sequences: 1393205
Number of extensions: 11398681
Number of successful extensions: 30783
Number of sequences better than 10.0: 491
Number of HSP's better than 10.0 without gapping: 29161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30745
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
