Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019035A_C01 KMC019035A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAH00892.1|AAH00892 HSPC154 protein [Homo sapiens] 36 0.33
ref|NP_054896.1| HSPC154 protein [Homo sapiens] gi|6841530|gb|AA... 36 0.33
ref|NP_603776.1| ABC transporter integral membrane protein [Fuso... 32 6.2
>gb|AAH00892.1|AAH00892 HSPC154 protein [Homo sapiens]
Length = 248
Score = 36.2 bits (82), Expect = 0.33
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 574 EDNVEHVEVNFYIRG--PHGHGKIFAEMFK-PADNEWQFTYLIVEIKAPSPAQLILE 413
+D ++H V FYI G P G ++A++ + P E+ F Y+ VEI++ +I+E
Sbjct: 185 KDGLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIE 241
>ref|NP_054896.1| HSPC154 protein [Homo sapiens] gi|6841530|gb|AAF29118.1|AF161503_1
HSPC154 [Homo sapiens]
Length = 248
Score = 36.2 bits (82), Expect = 0.33
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = -1
Query: 574 EDNVEHVEVNFYIRG--PHGHGKIFAEMFK-PADNEWQFTYLIVEIKAPSPAQLILE 413
+D ++H V FYI G P G ++A++ + P E+ F Y+ VEI++ +I+E
Sbjct: 185 KDGLKHTCVKFYIEGSEPGKQGTVYAQVKENPGSGEYDFRYIFVEIESYPRRTIIIE 241
>ref|NP_603776.1| ABC transporter integral membrane protein [Fusobacterium nucleatum
subsp. nucleatum ATCC 25586] gi|19714438|gb|AAL95075.1|
ABC transporter integral membrane protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
Length = 261
Score = 32.0 bits (71), Expect = 6.2
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Frame = +2
Query: 221 GSRFPYYVISSMVFLSLNFHPFWNTDRLRWSMLIAEKCSLQ----------*WTNIKDLF 370
G+ FP ++ + +FL+L F PF T + +ML+ EK S W +I LF
Sbjct: 186 GNIFPLLMLPAKIFLTLQFLPFMYTSYVP-TMLLLEKTSFDLILKNLFISITWLSILCLF 244
Query: 371 SSML 382
S+ML
Sbjct: 245 SAML 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,538,062
Number of Sequences: 1393205
Number of extensions: 11043384
Number of successful extensions: 30439
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 29817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30419
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
