Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019024A_C01 KMC019024A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566994.1| putative protein; protein id: At3g54190.1, supp... 35 0.49
pir||T47578 hypothetical protein F24B22.150 - Arabidopsis thalia... 35 0.49
gb|AAO42261.1| unknown protein [Arabidopsis thaliana] gi|2897323... 34 1.1
ref|NP_181397.1| unknown protein; protein id: At2g38630.1 [Arabi... 34 1.1
ref|NP_497697.1| E6-AP ubiquitin-protein ligase with WW domain(s... 33 2.4
>ref|NP_566994.1| putative protein; protein id: At3g54190.1, supported by cDNA:
gi_13430701, supported by cDNA: gi_16226833 [Arabidopsis
thaliana] gi|13430702|gb|AAK25973.1|AF360263_1 unknown
protein [Arabidopsis thaliana]
gi|14532904|gb|AAK64134.1| unknown protein [Arabidopsis
thaliana] gi|16226834|gb|AAL16275.1|AF428345_1
AT3g54190/F24B22_150 [Arabidopsis thaliana]
Length = 467
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -3
Query: 505 YTGNRHGLVHVWSH 464
YTGNRHGLVHVWS+
Sbjct: 454 YTGNRHGLVHVWSN 467
>pir||T47578 hypothetical protein F24B22.150 - Arabidopsis thaliana
gi|6822065|emb|CAB70993.1| putative protein [Arabidopsis
thaliana]
Length = 454
Score = 35.0 bits (79), Expect = 0.49
Identities = 13/14 (92%), Positives = 14/14 (99%)
Frame = -3
Query: 505 YTGNRHGLVHVWSH 464
YTGNRHGLVHVWS+
Sbjct: 441 YTGNRHGLVHVWSN 454
>gb|AAO42261.1| unknown protein [Arabidopsis thaliana] gi|28973237|gb|AAO63943.1|
unknown protein [Arabidopsis thaliana]
Length = 467
Score = 33.9 bits (76), Expect = 1.1
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -3
Query: 505 YTGNRHGLVHVWSH 464
YTGNRHGL+HVWS+
Sbjct: 454 YTGNRHGLLHVWSN 467
>ref|NP_181397.1| unknown protein; protein id: At2g38630.1 [Arabidopsis thaliana]
gi|25344227|pir||D84807 hypothetical protein At2g38630
[imported] - Arabidopsis thaliana
gi|3786009|gb|AAC67355.1| unknown protein [Arabidopsis
thaliana]
Length = 466
Score = 33.9 bits (76), Expect = 1.1
Identities = 12/14 (85%), Positives = 14/14 (99%)
Frame = -3
Query: 505 YTGNRHGLVHVWSH 464
YTGNRHGL+HVWS+
Sbjct: 453 YTGNRHGLLHVWSN 466
>ref|NP_497697.1| E6-AP ubiquitin-protein ligase with WW domain(s) [Caenorhabditis
elegans] gi|7503507|pir||T20274 hypothetical protein
F45H7.6 - Caenorhabditis elegans
gi|3875252|emb|CAA86773.1| Hypothetical protein F45H7.6
[Caenorhabditis elegans] gi|3877168|emb|CAA84325.1|
Hypothetical protein F45H7.6 [Caenorhabditis elegans]
Length = 889
Score = 32.7 bits (73), Expect = 2.4
Identities = 17/43 (39%), Positives = 23/43 (52%)
Frame = -3
Query: 499 GNRHGLVHVWSH**KGFSF*FWLGFSDGNDSDSALDASELPQH 371
GN++ +V VW + K + W+G D NDS LD L QH
Sbjct: 26 GNKNEVVKVWWNIDKPENCLDWIGLFDNNDSSFYLDQKSLRQH 68
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,194,548
Number of Sequences: 1393205
Number of extensions: 9017077
Number of successful extensions: 19468
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19461
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
