Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC019018A_C01 KMC019018A_c01
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194624.1| rac GTP binding protein Arac7; protein id: At4g... 136 1e-31
emb|CAD42726.1| putative rac protein [Nicotiana tabacum] 125 4e-28
emb|CAB96793.1| putative Rop family GTPase, ROP6 [Zea mays] gi|2... 124 6e-28
emb|CAB96792.1| putative Rop family GTPase, ROP7 [Zea mays] gi|2... 121 5e-27
dbj|BAA84493.1| small GTP-binding protein OsRac2 [Oryza sativa] 117 7e-26
>ref|NP_194624.1| rac GTP binding protein Arac7; protein id: At4g28950.1, supported
by cDNA: gi_3702961 [Arabidopsis thaliana]
gi|7438372|pir||T08950 GTP binding protein Arac7
[imported] - Arabidopsis thaliana
gi|3702962|gb|AAC63013.1| rac GTP binding protein Arac7
[Arabidopsis thaliana] gi|4972084|emb|CAB43909.1| rac
GTP binding protein Arac7 [Arabidopsis thaliana]
gi|7211208|gb|AAF40246.1|AF115474_1 Arac7 [Arabidopsis
thaliana] gi|7269793|emb|CAB79653.1| rac GTP binding
protein Arac7 [Arabidopsis thaliana]
Length = 209
Score = 136 bits (343), Expect = 1e-31
Identities = 69/86 (80%), Positives = 74/86 (85%), Gaps = 1/86 (1%)
Frame = -3
Query: 503 DRGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 324
D+GY ADH +NVITS +GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK
Sbjct: 125 DKGYLADH--TNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 182
Query: 323 EM-ASKKRHRRSGCSFVGIVCGGCAA 249
E+ +K HRRSGCS IVCGGC A
Sbjct: 183 EVPRRRKNHRRSGCSIASIVCGGCTA 208
>emb|CAD42726.1| putative rac protein [Nicotiana tabacum]
Length = 213
Score = 125 bits (313), Expect = 4e-28
Identities = 62/76 (81%), Positives = 65/76 (84%)
Frame = -3
Query: 503 DRGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 324
D Y ADHMGSN+IT GEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK
Sbjct: 138 DNRYLADHMGSNIITPDMGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK 197
Query: 323 EMASKKRHRRSGCSFV 276
E+ KKR R +GCS V
Sbjct: 198 EVPRKKRRRSTGCSIV 213
>emb|CAB96793.1| putative Rop family GTPase, ROP6 [Zea mays]
gi|28435520|gb|AAO41292.1| putative ROP family GTPase
ROP6 [Zea mays]
Length = 212
Score = 124 bits (311), Expect = 6e-28
Identities = 63/87 (72%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
Frame = -3
Query: 500 RGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 321
R Y ADH G++ +T+A+GEELRKQIGAAAYIECSSKTQQNVK+VFDTAIKVVLQPPRR+E
Sbjct: 126 RAYLADHPGASAVTTAQGEELRKQIGAAAYIECSSKTQQNVKSVFDTAIKVVLQPPRRRE 185
Query: 320 M--ASKKRHRRSGCSFVGIVCGG-CAA 249
A KK R SGCS + +VCG CAA
Sbjct: 186 AVPARKKNRRGSGCSIMNLVCGSTCAA 212
>emb|CAB96792.1| putative Rop family GTPase, ROP7 [Zea mays]
gi|28435522|gb|AAO41293.1| putative ROP family GTPase
ROP7 [Zea mays]
Length = 212
Score = 121 bits (303), Expect = 5e-27
Identities = 61/87 (70%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
Frame = -3
Query: 500 RGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKE 321
R Y ADH G++ IT+A+GEELR+QIGAAAYIECSSKTQQNVK+VFDTAIKVVLQPPRR+E
Sbjct: 126 RAYLADHPGASTITTAQGEELRRQIGAAAYIECSSKTQQNVKSVFDTAIKVVLQPPRRRE 185
Query: 320 M--ASKKRHRRSGCSFVGIVCGG-CAA 249
A +K R SGCS + ++CG CAA
Sbjct: 186 ATPARRKNRRGSGCSIMNLMCGSTCAA 212
>dbj|BAA84493.1| small GTP-binding protein OsRac2 [Oryza sativa]
Length = 214
Score = 117 bits (293), Expect = 7e-26
Identities = 58/83 (69%), Positives = 67/83 (79%), Gaps = 3/83 (3%)
Frame = -3
Query: 500 RGYFADHMGSNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRK- 324
R Y ADH ++ IT+A+GEELRKQIGAAAYIECSSKTQQN+KAVFDTAIKVVLQPPRR+
Sbjct: 127 RSYLADHPAASAITTAQGEELRKQIGAAAYIECSSKTQQNIKAVFDTAIKVVLQPPRRRG 186
Query: 323 --EMASKKRHRRSGCSFVGIVCG 261
MA KK R +GCS ++CG
Sbjct: 187 ETTMARKKTRRSTGCSLKNLMCG 209
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,281,728
Number of Sequences: 1393205
Number of extensions: 8154709
Number of successful extensions: 18391
Number of sequences better than 10.0: 401
Number of HSP's better than 10.0 without gapping: 18018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18372
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
