Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018991A_C01 KMC018991A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_785151.1| integral membrane protein [Lactobacillus planta... 36 0.25
ref|NP_192976.1| putative protein; protein id: At4g12390.1, supp... 34 0.96
ref|NP_564802.1| expressed protein; protein id: At1g62770.1, sup... 34 1.3
gb|AAM67063.1| putative ripening-related protein [Arabidopsis th... 34 1.3
gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens] 34 1.3
>ref|NP_785151.1| integral membrane protein [Lactobacillus plantarum WCFS1]
gi|28271094|emb|CAD63999.1| integral membrane protein
[Lactobacillus plantarum WCFS1]
Length = 192
Score = 36.2 bits (82), Expect = 0.25
Identities = 25/84 (29%), Positives = 42/84 (49%), Gaps = 3/84 (3%)
Frame = +2
Query: 74 KKMTNYRSAKFTGHDINLN*LLYIYNLSHT*N*VGQIT*LETATAMTLIT-PQLNLAATA 250
K+ N+R + G DINL L Y+ + +I+ L A +I+ L +A T+
Sbjct: 63 KQNPNWRKGTYLGADINLTVLFYLLLID-----FNRISTLGFALIAIIISIVALPMAYTS 117
Query: 251 RDKRTGLQ--WAHVGLHNWHGTRV 316
R++ G++ W ++ NWH T V
Sbjct: 118 RNRLVGIRIPWTYLSEENWHRTNV 141
>ref|NP_192976.1| putative protein; protein id: At4g12390.1, supported by cDNA:
27615., supported by cDNA: gi_15450853, supported by
cDNA: gi_20148698 [Arabidopsis thaliana]
gi|11358349|pir||T48149 hypothetical protein T4C9.230 -
Arabidopsis thaliana gi|5281050|emb|CAB45986.1| putative
protein [Arabidopsis thaliana]
gi|7267941|emb|CAB78282.1| putative protein [Arabidopsis
thaliana] gi|15450854|gb|AAK96698.1| putative protein
[Arabidopsis thaliana] gi|20148699|gb|AAM10240.1|
putative protein [Arabidopsis thaliana]
Length = 206
Score = 34.3 bits (77), Expect = 0.96
Identities = 21/42 (50%), Positives = 26/42 (61%)
Frame = -2
Query: 534 DGFPPPQSEDAVNEDDKSAVRVRVVPTAPLTSHALALINRLA 409
DGF + V KSA+R RVV A +TS+ALAL+NR A
Sbjct: 164 DGFDGKVMDGVV----KSAIRRRVVHVARVTSNALALVNRFA 201
>ref|NP_564802.1| expressed protein; protein id: At1g62770.1, supported by cDNA:
93927. [Arabidopsis thaliana]
gi|6630457|gb|AAF19545.1|AC007190_13 F23N19.14
[Arabidopsis thaliana]
Length = 204
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/45 (44%), Positives = 27/45 (59%)
Frame = -2
Query: 534 DGFPPPQSEDAVNEDDKSAVRVRVVPTAPLTSHALALINRLARSR 400
DGF SE A+ K +R +VV A +TS+ALAL+N+ A R
Sbjct: 159 DGF----SERAMGGKVKRLIRYKVVHVAQVTSNALALVNQFAEKR 199
>gb|AAM67063.1| putative ripening-related protein [Arabidopsis thaliana]
Length = 204
Score = 33.9 bits (76), Expect = 1.3
Identities = 20/45 (44%), Positives = 27/45 (59%)
Frame = -2
Query: 534 DGFPPPQSEDAVNEDDKSAVRVRVVPTAPLTSHALALINRLARSR 400
DGF SE A+ K +R +VV A +TS+ALAL+N+ A R
Sbjct: 159 DGF----SERAMGGKVKRLIRYKVVHVAQVTSNALALVNQFAEKR 199
>gb|AAB05810.1| super cysteine rich protein; SCRP [Homo sapiens]
Length = 46
Score = 33.9 bits (76), Expect = 1.3
Identities = 14/37 (37%), Positives = 16/37 (42%)
Frame = -1
Query: 283 MCPLKSSSLVSCCSCQIKLGCD*CHCCCSLKLCDLAH 173
+CP +S CC C C C CCC C L H
Sbjct: 4 LCPDRSRCCCCCCCCCCCCCCCCCCCCCCCFCCCLKH 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,455,004
Number of Sequences: 1393205
Number of extensions: 8330163
Number of successful extensions: 19031
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18975
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
