Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018984A_C01 KMC018984A_c01
(675 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567065.1| putative protein; protein id: At3g58470.1, supp... 44 0.002
sp|Q08810|IF2C_GALSU Translation initiation factor IF-2, chlorop... 33 4.6
ref|NP_704528.1| hypothetical protein [Plasmodium falciparum 3D7... 33 4.6
gb|AAC64191.1| carboxypeptidase kex1 precursor [Pichia pastoris] 32 7.9
>ref|NP_567065.1| putative protein; protein id: At3g58470.1, supported by cDNA:
gi_16648682 [Arabidopsis thaliana]
gi|16648683|gb|AAL25534.1| AT3g58470/F14P22_60
[Arabidopsis thaliana] gi|22137250|gb|AAM91470.1|
AT3g58470/F14P22_60 [Arabidopsis thaliana]
Length = 248
Score = 44.3 bits (103), Expect = 0.002
Identities = 19/23 (82%), Positives = 21/23 (90%)
Frame = -1
Query: 675 KLGNEFRLFTNYDPGTRLGGWEK 607
KLGNEFRLF +YDPGTRLGG E+
Sbjct: 224 KLGNEFRLFISYDPGTRLGGLEE 246
>sp|Q08810|IF2C_GALSU Translation initiation factor IF-2, chloroplast
gi|480088|pir||S36410 translation initiation factor
IF-2, chloroplast - red alga (Cyanidium caldarium)
chloroplast (fragment) gi|396523|emb|CAA47239.1|
initiation factor 2 [Cyanidium caldarium]
Length = 259
Score = 32.7 bits (73), Expect = 4.6
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Frame = +3
Query: 30 KVNCLYLDQKNQLYI*LDGGWD----DKHS*FHLAEQAL--HCKHGRYCLVKELIKN 182
K+N +D+KN +YI + D DKH A+ H HG+ L+++LIKN
Sbjct: 140 KINITTIDKKNNIYINTESNNDQNINDKHVKLRAPIVAVLGHVNHGKTSLIEKLIKN 196
>ref|NP_704528.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499267|emb|CAD51347.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1011
Score = 32.7 bits (73), Expect = 4.6
Identities = 20/50 (40%), Positives = 24/50 (48%)
Frame = +3
Query: 294 SLSY*TYMDQRNKILPRRVQHRSKHTTTL*NLNRPLNGNWNKSKKSCSWS 443
SL Y MD N L ++ + SK TTT N N N N + SCS S
Sbjct: 628 SLEYEKGMDNNNDQLDKQKKKTSKGTTTTTTTNNNNNNNNNNNNNSCSSS 677
>gb|AAC64191.1| carboxypeptidase kex1 precursor [Pichia pastoris]
Length = 623
Score = 32.0 bits (71), Expect = 7.9
Identities = 22/52 (42%), Positives = 29/52 (55%)
Frame = +3
Query: 435 SWSPKLIVIPQKCSYLINNSS*IASMVVSKIVESPCHQICNCSFRQLGDKPA 590
S+ P L+ +KC LIN+SS AS S+I S C +I N + R DK A
Sbjct: 241 SYMPGLLQQQEKCQNLINHSSGEAS--ESQISYSACEKILNDALRFTRDKKA 290
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 588,023,914
Number of Sequences: 1393205
Number of extensions: 12520284
Number of successful extensions: 29208
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 28536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29195
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
