Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018973A_C01 KMC018973A_c01
(465 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564773.1| expressed protein; protein id: At1g61170.1, sup... 54 6e-07
gb|AAM63202.1| unknown [Arabidopsis thaliana] 51 5e-06
ref|NP_194547.1| putative protein; protein id: At4g28180.1 [Arab... 48 6e-05
ref|NP_172579.1| hypothetical protein; protein id: At1g11120.1 [... 42 0.003
dbj|BAB32960.1| P0504D03.6 [Oryza sativa (japonica cultivar-grou... 41 0.007
>ref|NP_564773.1| expressed protein; protein id: At1g61170.1, supported by cDNA:
205500. [Arabidopsis thaliana] gi|25404312|pir||E96637
hypothetical protein F11P17.11 [imported] - Arabidopsis
thaliana gi|2443885|gb|AAB71478.1| Unknown protein
[Arabidopsis thaliana]
Length = 251
Score = 54.3 bits (129), Expect = 6e-07
Identities = 40/95 (42%), Positives = 51/95 (53%), Gaps = 12/95 (12%)
Frame = -3
Query: 364 RDAGEGSGRRSRSPSCVR---------KVGGGATRKVDAGADRKVVPPATTNAVEKEKSE 212
RD GE SGRRSRSP+ R +VGG TRK + R + PA N +++++ +
Sbjct: 170 RDPGERSGRRSRSPATNRSVMDSNQSSRVGGAKTRKNNQSPGRVRLDPAK-NGLDQQQHQ 228
Query: 211 N---ETEEVGEKNDVVQQGESLENPHVSLECFIFL 116
N TEE+ LENP VSLECFIFL
Sbjct: 229 NYGYTTEEL------------LENPLVSLECFIFL 251
>gb|AAM63202.1| unknown [Arabidopsis thaliana]
Length = 252
Score = 51.2 bits (121), Expect = 5e-06
Identities = 37/92 (40%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Frame = -3
Query: 364 RDAGEGSGRRSRSPSCVR---------KVGGGATRKVDAGADRKVVPPATTNAVEKEKSE 212
RD GE SGRRSRSP+ R +VGG TRK + R V + +
Sbjct: 171 RDPGERSGRRSRSPATNRSVMDSNQSSRVGGTKTRKNNQSPGR----------VRLDPDK 220
Query: 211 NETEEVGEKNDVVQQGESLENPHVSLECFIFL 116
N ++ +N E LENP VSLECFIFL
Sbjct: 221 NGLDQQHPQNYSYTTEELLENPLVSLECFIFL 252
>ref|NP_194547.1| putative protein; protein id: At4g28180.1 [Arabidopsis thaliana]
gi|7486203|pir||T09034 hypothetical protein F26K10.60 -
Arabidopsis thaliana gi|7269672|emb|CAB79620.1| putative
protein [Arabidopsis thaliana]
Length = 256
Score = 47.8 bits (112), Expect = 6e-05
Identities = 37/110 (33%), Positives = 54/110 (48%), Gaps = 3/110 (2%)
Frame = -3
Query: 436 RLVRGRES---GPLANRKLNASPARVRRDAGEGSGRRSRSPSCVRKVGGGATRKVDAGAD 266
RLVR R+S P NR+ S R + RRS+SP+ + A R +
Sbjct: 152 RLVRERQSRQPNPTHNRRNVDSGPLPRSGLSDNPRRRSQSPAT--RAPSSARR---SPMK 206
Query: 265 RKVVPPATTNAVEKEKSENETEEVGEKNDVVQQGESLENPHVSLECFIFL 116
++V P A E +K E ETE+V + + ++ +P VS+ECFIFL
Sbjct: 207 KRVGAPEKDGATEVKKKEEETEKVTAEVKKEEDVTAVRDPEVSMECFIFL 256
>ref|NP_172579.1| hypothetical protein; protein id: At1g11120.1 [Arabidopsis
thaliana] gi|25402647|pir||C86245 hypothetical protein
[imported] - Arabidopsis thaliana
gi|2252628|gb|AAB65491.1| hypothetical protein;
12757-8343 [Arabidopsis thaliana]
Length = 367
Score = 42.0 bits (97), Expect = 0.003
Identities = 36/95 (37%), Positives = 47/95 (48%), Gaps = 12/95 (12%)
Frame = -3
Query: 364 RDAGEGSGRRSRSPSCVRKVGGGATRKVDA----GADRK-------VVPPATTNAVEKEK 218
RD+ E S RRSRSP+ R V G TR + GA R+ V N ++E
Sbjct: 275 RDSTERSERRSRSPAMNRSVMMGPTRSQQSTDSCGAMRRQSQSPGRVRLNPNMNGSDQEC 334
Query: 217 SENETE-EVGEKNDVVQQGESLENPHVSLECFIFL 116
+ ++ +G N +S ENP VSLECFIFL
Sbjct: 335 NHHKWPGSIGNYNSA--PNDSFENPLVSLECFIFL 367
>dbj|BAB32960.1| P0504D03.6 [Oryza sativa (japonica cultivar-group)]
gi|14495203|dbj|BAB60922.1| OSJNBa0054L14.15 [Oryza
sativa (japonica cultivar-group)]
Length = 574
Score = 40.8 bits (94), Expect = 0.007
Identities = 29/100 (29%), Positives = 46/100 (46%)
Frame = -3
Query: 460 EKRVKSGSRLVRGRESGPLANRKLNASPARVRRDAGEGSGRRSRSPSCVRKVGGGATRKV 281
+K K + +R +SG +A A P R ++D GE GR + S V G A +K
Sbjct: 184 KKNRKKKKKALRAGDSGKVAAPDDPAEPTRPQQDVGEVDGRLAESEQEVPPNAGKAKKKA 243
Query: 280 DAGADRKVVPPATTNAVEKEKSENETEEVGEKNDVVQQGE 161
A A +K P A +A +E+ + + E+ QG+
Sbjct: 244 SAQARKK--PSAKQHAAAQEEEDGDLMAEAEEEVAPWQGD 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,525,498
Number of Sequences: 1393205
Number of extensions: 10160783
Number of successful extensions: 51565
Number of sequences better than 10.0: 232
Number of HSP's better than 10.0 without gapping: 45010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51009
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
