Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018967A_C01 KMC018967A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK77165.1|AF394239_1 suppressor of variegation related 1 [Ar... 65 4e-10
pir||G86171 hypothetical protein [imported] - Arabidopsis thalia... 65 4e-10
ref|NP_171901.1| hypothetical protein; protein id: At1g04050.1 [... 63 2e-09
gb|AAL01113.2|AF408062_1 Su(VAR)3-9-related protein 4 [Arabidops... 57 1e-07
ref|NP_187088.2| hypothetical protein; protein id: At3g04380.1, ... 57 1e-07
>gb|AAK77165.1|AF394239_1 suppressor of variegation related 1 [Arabidopsis thaliana]
Length = 630
Score = 65.1 bits (157), Expect = 4e-10
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = -3
Query: 493 TSRKISAQEELTWDYSINFDDHDQPIKLFECRCGSKFCRNMKRSNSKFSL 344
T+R I A EEL WDY I+F+D+D +K F+C CGS+FCRN KRS +
Sbjct: 577 TTRDIEAMEELAWDYGIDFNDNDSLMKPFDCLCGSRFCRNKKRSTKTMQI 626
>pir||G86171 hypothetical protein [imported] - Arabidopsis thaliana
gi|4204284|gb|AAD10665.1| Hypothetical protein
[Arabidopsis thaliana]
Length = 734
Score = 65.1 bits (157), Expect = 4e-10
Identities = 27/50 (54%), Positives = 35/50 (70%)
Frame = -3
Query: 493 TSRKISAQEELTWDYSINFDDHDQPIKLFECRCGSKFCRNMKRSNSKFSL 344
T+R I A EEL WDY I+F+D+D +K F+C CGS+FCRN KRS +
Sbjct: 681 TTRDIEAMEELAWDYGIDFNDNDSLMKPFDCLCGSRFCRNKKRSTKTMQI 730
>ref|NP_171901.1| hypothetical protein; protein id: At1g04050.1 [Arabidopsis
thaliana]
Length = 468
Score = 62.8 bits (151), Expect = 2e-09
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = -3
Query: 487 RKISAQEELTWDYSINFDDHDQPIKLFECRCGSKFCRNMKRSNSKFSL 344
R I A EEL WDY I+F+D+D +K F+C CGS+FCRN KRS +
Sbjct: 417 RDIEAMEELAWDYGIDFNDNDSLMKPFDCLCGSRFCRNKKRSTKTMQI 464
>gb|AAL01113.2|AF408062_1 Su(VAR)3-9-related protein 4 [Arabidopsis thaliana]
Length = 488
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -3
Query: 493 TSRKISAQEELTWDYSINFDDHDQPIKLFECRCGSKFCRNMKRSNSK 353
T R + A +ELTWDY I+F+D P+K F C CGS+ CR+ K S+
Sbjct: 420 TLRDVKAMDELTWDYMIDFNDKSHPVKAFRCCCGSESCRDRKIKGSQ 466
>ref|NP_187088.2| hypothetical protein; protein id: At3g04380.1, supported by cDNA:
gi_17066862 [Arabidopsis thaliana]
Length = 492
Score = 56.6 bits (135), Expect = 1e-07
Identities = 23/47 (48%), Positives = 31/47 (65%)
Frame = -3
Query: 493 TSRKISAQEELTWDYSINFDDHDQPIKLFECRCGSKFCRNMKRSNSK 353
T R + A +ELTWDY I+F+D P+K F C CGS+ CR+ K S+
Sbjct: 420 TLRDVKAMDELTWDYMIDFNDKSHPVKAFRCCCGSESCRDRKIKGSQ 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 398,465,120
Number of Sequences: 1393205
Number of extensions: 7901569
Number of successful extensions: 18332
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 17763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18268
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
