Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018953A_C01 KMC018953A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51481 hypothetical protein T21H19_30 - Arabidopsis thalian... 94 1e-18
ref|NP_568326.1| putative protein; protein id: At5g16110.1, supp... 93 3e-18
ref|NP_566176.1| Expressed protein; protein id: At3g02555.1, sup... 76 3e-13
ref|NP_564931.1| expressed protein; protein id: At1g68490.1, sup... 72 6e-12
ref|NP_172796.1| unknown protein; protein id: At1g13390.1 [Arabi... 64 1e-09
>pir||T51481 hypothetical protein T21H19_30 - Arabidopsis thaliana
gi|9755821|emb|CAC01852.1| putative protein [Arabidopsis
thaliana]
Length = 244
Score = 93.6 bits (231), Expect = 1e-18
Identities = 77/176 (43%), Positives = 100/176 (56%), Gaps = 20/176 (11%)
Frame = +1
Query: 91 SGVKKGNNMNHCGYQQKNILTSCEEM----RMEPVVCPKPRRLSLLNNSSIDNQIRPIMR 258
S VKK MNHC QQ N S EEM R + VVCPKPRR+ LL N N IRP+ R
Sbjct: 62 SEVKK---MNHCNLQQ-NAFMSREEMMGFDRKDLVVCPKPRRVGLLAN----NVIRPL-R 112
Query: 259 PPMINSHPEIEEDSGVRAELLDIILPKVNCYPERSG--GMVVASSPPFFCGSPPSRASNP 432
M + ++ DS AELL+II K E +G G +++SSPP+F GSPPSRA+NP
Sbjct: 113 LHMSQAAADLC-DSKAGAELLEIIRRK-----EDNGTIGQLLSSSPPYFPGSPPSRAANP 166
Query: 433 VIQDEQFRNGYNGSFSPF-------------SMAPASPSSSARGCVPVKYS-HTPA 558
+ QD +FR+ SP S + +S SSS+RGCV +K+ ++PA
Sbjct: 167 LAQDARFRDEKLNPISPNSPFLQPYSATGFPSPSSSSSSSSSRGCVRMKFGLNSPA 222
>ref|NP_568326.1| putative protein; protein id: At5g16110.1, supported by cDNA:
gi_13358202, supported by cDNA: gi_15809951 [Arabidopsis
thaliana] gi|11762168|gb|AAG40362.1|AF325010_1 AT5g16110
[Arabidopsis thaliana] gi|15809952|gb|AAL06903.1|
AT5g16110/T21H19_30 [Arabidopsis thaliana]
Length = 178
Score = 92.8 bits (229), Expect = 3e-18
Identities = 73/168 (43%), Positives = 96/168 (56%), Gaps = 20/168 (11%)
Frame = +1
Query: 115 MNHCGYQQKNILTSCEEM----RMEPVVCPKPRRLSLLNNSSIDNQIRPIMRPPMINSHP 282
MNHC QQ N S EEM R + VVCPKPRR+ LL N N IRP+ R M +
Sbjct: 1 MNHCNLQQ-NAFMSREEMMGFDRKDLVVCPKPRRVGLLAN----NVIRPL-RLHMSQAAA 54
Query: 283 EIEEDSGVRAELLDIILPKVNCYPERSG--GMVVASSPPFFCGSPPSRASNPVIQDEQFR 456
++ DS AELL+II K E +G G +++SSPP+F GSPPSRA+NP+ QD +FR
Sbjct: 55 DLC-DSKAGAELLEIIRRK-----EDNGTIGQLLSSSPPYFPGSPPSRAANPLAQDARFR 108
Query: 457 NGYNGSFSPF-------------SMAPASPSSSARGCVPVKYS-HTPA 558
+ SP S + +S SSS+RGCV +K+ ++PA
Sbjct: 109 DEKLNPISPNSPFLQPYSATGFPSPSSSSSSSSSRGCVRMKFGLNSPA 156
>ref|NP_566176.1| Expressed protein; protein id: At3g02555.1, supported by cDNA:
1232. [Arabidopsis thaliana] gi|21537194|gb|AAM61535.1|
unknown [Arabidopsis thaliana]
Length = 162
Score = 75.9 bits (185), Expect = 3e-13
Identities = 60/159 (37%), Positives = 80/159 (49%), Gaps = 11/159 (6%)
Frame = +1
Query: 115 MNHCGYQQKNILTSCEEMR---------MEPVVCPKPRRLSLLNNSSIDNQIRPIMRPPM 267
MNHC QQ N S EE R ++ VVCPKPRR + N IRP
Sbjct: 1 MNHCSLQQ-NAFLSREESRGFVPIYSHPVDSVVCPKPRRAN--------NVIRPFRLHFS 51
Query: 268 INSHPEIEEDSGVRAELLDIILPKVNCYPERSGGMVVASSPPFFCGSPPSRASNPVIQDE 447
++ ++ DS +LLDI K + V + SPPFF GSPPSRA+NP+ QD
Sbjct: 52 LSGADDVC-DSKAGEDLLDIFRRKES---------VSSRSPPFFLGSPPSRAANPLAQDA 101
Query: 448 QFRNGYNGSFSPFSMAPASPSSS--ARGCVPVKYSHTPA 558
+F + + SP S++P PS+S GC +K+ PA
Sbjct: 102 RFGDEKLNTVSP-SLSPLLPSASRVKSGCGRMKFGVKPA 139
>ref|NP_564931.1| expressed protein; protein id: At1g68490.1, supported by cDNA:
37060. [Arabidopsis thaliana] gi|25404742|pir||A96709
unknown protein, 35272-36292 [imported] - Arabidopsis
thaliana gi|12324888|gb|AAG52398.1|AC011915_12 unknown
protein; 35272-36292 [Arabidopsis thaliana]
gi|21593205|gb|AAM65154.1| unknown [Arabidopsis
thaliana] gi|29028824|gb|AAO64791.1| At1g68490
[Arabidopsis thaliana]
Length = 183
Score = 71.6 bits (174), Expect = 6e-12
Identities = 50/134 (37%), Positives = 62/134 (45%), Gaps = 8/134 (5%)
Frame = +1
Query: 154 SCEEMRMEPVVCPKPRRLSLLNNSSIDNQIRPIMRPPMINSHPEIEEDSGVRAELLDIIL 333
S E VVCPKPRR+ L NN P SH +S ++LDIIL
Sbjct: 23 SVVERDQTTVVCPKPRRIGLRNNHH-----HPSRSLRCYFSHQLELCESKAETDILDIIL 77
Query: 334 PKVNCYPERSGGMVVASSPPFFCGSPPSRASNPVIQDEQFRNGYNGSFS--------PFS 489
K E+ V+ S PF CGSPPSR +NP+ QD +FR+ S P S
Sbjct: 78 TKDGYGAEQVNKQVIDSPSPFLCGSPPSRVANPLTQDARFRDEIVSVSSVIPPQLGLPPS 137
Query: 490 MAPASPSSSARGCV 531
+P+S S GCV
Sbjct: 138 SSPSSSSGRKGGCV 151
>ref|NP_172796.1| unknown protein; protein id: At1g13390.1 [Arabidopsis thaliana]
gi|9958074|gb|AAG09563.1|AC011810_22 Unknown protein
[Arabidopsis thaliana]
Length = 176
Score = 64.3 bits (155), Expect = 1e-09
Identities = 55/154 (35%), Positives = 73/154 (46%), Gaps = 15/154 (9%)
Frame = +1
Query: 115 MNHCGYQQKNILTSCEEMRM--------EPVVCPKPRRLSLLNNSSIDNQIRPIMRPPMI 270
MN CG QQ + EEMR + V+CPKPRR+ LN+ S + +R +
Sbjct: 2 MNSCGIQQN----AFEEMRRNAAVSDRRDAVICPKPRRVGALNHHSSRS-----LRWQLN 52
Query: 271 NSHPEIEEDSGVRAELLDIILPKVNCYP-ERSGGMVVASSPPFFCGSPPSRASNPVIQDE 447
+ E +SG +E+LD IL K E+ V + P FF GSPPSR SNP+ +D
Sbjct: 53 HQMELCESNSG--SEILDFILTKGGGGGGEQDQTRTVMTPPLFFTGSPPSRVSNPLTKDS 110
Query: 448 QFRN-----GYNGSFSPFSMAPASPSSSARG-CV 531
FR +P + P PSS G CV
Sbjct: 111 LFREELLMVASPSPSTPRATKPQPPSSPRNGSCV 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,302,092
Number of Sequences: 1393205
Number of extensions: 12280886
Number of successful extensions: 36539
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 34479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36349
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
