Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018925A_C01 KMC018925A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568040.1| expressed protein; protein id: At4g38370.1, sup... 41 0.015
gb|AAM64469.1| unknown [Arabidopsis thaliana] 41 0.015
pir||T05665 hypothetical protein F22I13.140 - Arabidopsis thalia... 41 0.015
dbj|BAB83140.1| maturase K [Hydrostachys multifida] 32 7.0
ref|NP_799615.1| putative transcriptional regulator, LysR family... 32 9.2
>ref|NP_568040.1| expressed protein; protein id: At4g38370.1, supported by cDNA:
249631. [Arabidopsis thaliana]
Length = 225
Score = 40.8 bits (94), Expect = 0.015
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = -1
Query: 634 HAANQHKEPAYDDLASILNAVQVAPVLSQHRKYALLTGELRGVL 503
H+A Q + D LA +VA VLSQHRK+ALLTGELR ++
Sbjct: 185 HSAKQQEG---DGLAEKFQLSRVASVLSQHRKFALLTGELRPLI 225
>gb|AAM64469.1| unknown [Arabidopsis thaliana]
Length = 225
Score = 40.8 bits (94), Expect = 0.015
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = -1
Query: 634 HAANQHKEPAYDDLASILNAVQVAPVLSQHRKYALLTGELRGVL 503
H+A Q + D LA +VA VLSQHRK+ALLTGELR ++
Sbjct: 185 HSAKQQEG---DGLAEKFQLSRVASVLSQHRKFALLTGELRPLI 225
>pir||T05665 hypothetical protein F22I13.140 - Arabidopsis thaliana
gi|4539345|emb|CAB37493.1| hypothetical protein
[Arabidopsis thaliana] gi|7270821|emb|CAB80502.1|
hypothetical protein [Arabidopsis thaliana]
Length = 261
Score = 40.8 bits (94), Expect = 0.015
Identities = 23/44 (52%), Positives = 29/44 (65%)
Frame = -1
Query: 634 HAANQHKEPAYDDLASILNAVQVAPVLSQHRKYALLTGELRGVL 503
H+A Q + D LA +VA VLSQHRK+ALLTGELR ++
Sbjct: 221 HSAKQQEG---DGLAEKFQLSRVASVLSQHRKFALLTGELRPLI 261
>dbj|BAB83140.1| maturase K [Hydrostachys multifida]
Length = 501
Score = 32.0 bits (71), Expect = 7.0
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = -3
Query: 149 LHLNILNSLQIFWNGDVNPFWLLPFNLSVYYHIPNF 42
+HL +L + FW DV+ LL F L YY+ NF
Sbjct: 155 IHLELLVQILRFWLKDVSSLHLLRFFLHQYYYFKNF 190
>ref|NP_799615.1| putative transcriptional regulator, LysR family [Vibrio
parahaemolyticus RIMD 2210633]
gi|28808243|dbj|BAC61448.1| putative transcriptional
regulator, LysR family [Vibrio parahaemolyticus]
Length = 280
Score = 31.6 bits (70), Expect = 9.2
Identities = 22/79 (27%), Positives = 36/79 (44%)
Frame = +2
Query: 293 TFSGGKKQPVIHKLLPLNVIFLPRD*NQTRLQNQGLI*QLTRFNSLATIGDPIPTKNSCL 472
TF + +IH++ P N I + D + L N + Q+ S TI +P S
Sbjct: 84 TFRLSCNEALIHRITPTNTISICADTDLPSLLNDLRLKQIDLIISPTTIHNPSFISESVF 143
Query: 473 SARPQIVKISKDSPKLSGK 529
P +V +D P+++GK
Sbjct: 144 E-EPMVVICRQDHPRIAGK 161
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 483,658,493
Number of Sequences: 1393205
Number of extensions: 9356477
Number of successful extensions: 16237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16234
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
