Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018918A_C01 KMC018918A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187519.1| unknown protein; protein id: At3g09070.1 [Arabi... 102 4e-21
dbj|BAB84390.1| P0529E05.5 [Oryza sativa (japonica cultivar-grou... 96 3e-19
ref|NP_195737.1| putative protein; protein id: At5g01170.1 [Arab... 94 1e-18
gb|AAO42234.1| unknown protein [Arabidopsis thaliana] 92 5e-18
ref|NP_181342.1| hypothetical protein; protein id: At2g38070.1 [... 84 2e-15
>ref|NP_187519.1| unknown protein; protein id: At3g09070.1 [Arabidopsis thaliana]
gi|5923672|gb|AAD56323.1|AC009326_10 unknown protein
[Arabidopsis thaliana]
Length = 685
Score = 102 bits (254), Expect = 4e-21
Identities = 73/171 (42%), Positives = 89/171 (51%), Gaps = 16/171 (9%)
Frame = -1
Query: 607 RWTKWSIWXFIHRRGGNNKEEDED------RGANGNGVERSFSESWQEFRGERNGDVRGG 446
RW KWSI I+R+ N EE+E+ R NG VERS SESW E R NG GG
Sbjct: 540 RWGKWSILGLIYRKSVNKYEEEEEEEEDRYRRLNGGMVERSLSESWPELR---NG---GG 593
Query: 445 GGFNRNMFRSNSSVSWRNAPSIGESFVTGRKSDVQGNGYHGRKGRDEFVLERNRSARYSP 266
GG M RSNS+VSWR++ G S + NG RN+S+RYSP
Sbjct: 594 GGGGPRMVRSNSNVSWRSS---------GGGSARKVNGLD----------RRNKSSRYSP 634
Query: 265 SSMDNGLLRLYL---------TPGGGRRNGSGKGRAN-QAHSIARSVLRLY 143
+ +NG+L+ YL + GG G G G AN HSIARSV+RLY
Sbjct: 635 KNGENGMLKFYLPHMKASRRMSGTGGAGGGGGGGWANSHGHSIARSVMRLY 685
>dbj|BAB84390.1| P0529E05.5 [Oryza sativa (japonica cultivar-group)]
gi|20805191|dbj|BAB92860.1| P0529H11.33 [Oryza sativa
(japonica cultivar-group)]
Length = 969
Score = 96.3 bits (238), Expect = 3e-19
Identities = 68/160 (42%), Positives = 88/160 (54%), Gaps = 6/160 (3%)
Frame = -1
Query: 607 RWTK-WSIWXFIHRRGGNNKEEDEDRGANGNGVERSFSESWQEFRGERNGDVRGGGGFNR 431
RW K WS+W FIHRR + G + +RSFSE+W + R VRG +N
Sbjct: 492 RWRKAWSLWGFIHRRASGRRS-----GGPSDIADRSFSEAWPDLR------VRG---YNP 537
Query: 430 NMFRSNSSVSWRNAPSIGESFV-TGRKSDVQGNGYHGRKGRDEFVLERNRSARYSPSS-M 257
M R NS++S R++ S + + R+S V NG R+ R+E VLERNRSARYSP +
Sbjct: 538 KMQRCNSNLSARSSFSSNSGGLGSSRRSHVDVNGSSARR-REEHVLERNRSARYSPPGRV 596
Query: 256 DNGLLRLYLTP---GGGRRNGSGKGRANQAHSIARSVLRL 146
DNG+LR YLTP GGG G G+ R A + RL
Sbjct: 597 DNGMLRFYLTPMRSGGG--GGGGRARVAAASETVKGGTRL 634
>ref|NP_195737.1| putative protein; protein id: At5g01170.1 [Arabidopsis thaliana]
gi|11357834|pir||T45957 hypothetical protein F7J8.150 -
Arabidopsis thaliana gi|6759440|emb|CAB69845.1| putative
protein [Arabidopsis thaliana]
Length = 568
Score = 94.4 bits (233), Expect = 1e-18
Identities = 72/174 (41%), Positives = 88/174 (50%), Gaps = 19/174 (10%)
Frame = -1
Query: 607 RWTKWSIWXFIHRRGGNNKEEDEDRGANGNG-VERSFSESWQEFRGERNGDVRGGGGFNR 431
RW KWSI FI+R+G +++EED +N G VERS SESW E RNG+ GGG
Sbjct: 430 RWGKWSILGFIYRKGKDDEEEDRYSRSNSAGMVERSLSESWPEM---RNGE--GGG---P 481
Query: 430 NMFRSNSSVSWRNAPSIGESFVTGRKSDVQGNGYHGRKGRDEFVLERNRSARYSPSSMDN 251
M RSNS+VSWR++ G G RN+S+RYS +N
Sbjct: 482 KMRRSNSNVSWRSS----------------GGG-----------SARNKSSRYSSKDGEN 514
Query: 250 GLLRLYLTP-----------GGGRRNGSGKG------RAN-QAHSIARSVLRLY 143
G+LR YLTP GGG G G G +AN HSIAR V+RLY
Sbjct: 515 GMLRFYLTPMRRSWKTSGGSGGGGGGGGGGGWEKTAAKANSHGHSIARRVMRLY 568
>gb|AAO42234.1| unknown protein [Arabidopsis thaliana]
Length = 568
Score = 92.0 bits (227), Expect = 5e-18
Identities = 71/174 (40%), Positives = 87/174 (49%), Gaps = 19/174 (10%)
Frame = -1
Query: 607 RWTKWSIWXFIHRRGGNNKEEDEDRGANGNG-VERSFSESWQEFRGERNGDVRGGGGFNR 431
RW KW I FI+R+G +++EED +N G VERS SESW E RNG+ GGG
Sbjct: 430 RWGKWCILGFIYRKGKDDEEEDRYSRSNSAGMVERSLSESWPEM---RNGE--GGG---P 481
Query: 430 NMFRSNSSVSWRNAPSIGESFVTGRKSDVQGNGYHGRKGRDEFVLERNRSARYSPSSMDN 251
M RSNS+VSWR++ G G RN+S+RYS +N
Sbjct: 482 KMRRSNSNVSWRSS----------------GGG-----------SARNKSSRYSSKDGEN 514
Query: 250 GLLRLYLTP-----------GGGRRNGSGKG------RAN-QAHSIARSVLRLY 143
G+LR YLTP GGG G G G +AN HSIAR V+RLY
Sbjct: 515 GVLRFYLTPMRRSWKTSGGSGGGGGGGGGGGWEKTAAKANSHGHSIARRVMRLY 568
>ref|NP_181342.1| hypothetical protein; protein id: At2g38070.1 [Arabidopsis
thaliana] gi|25370584|pir||E84800 hypothetical protein
At2g38070 [imported] - Arabidopsis thaliana
Length = 619
Score = 83.6 bits (205), Expect = 2e-15
Identities = 54/150 (36%), Positives = 76/150 (50%)
Frame = -1
Query: 607 RWTKWSIWXFIHRRGGNNKEEDEDRGANGNGVERSFSESWQEFRGERNGDVRGGGGFNRN 428
RW+ W+I+ +HR+ GN EE+E R +GV+R+FS SW +V GF+
Sbjct: 491 RWS-WNIFGLLHRKNGNKYEEEERR----SGVDRTFSGSW---------NVEPRNGFDPK 536
Query: 427 MFRSNSSVSWRNAPSIGESFVTGRKSDVQGNGYHGRKGRDEFVLERNRSARYSPSSMDNG 248
M RSNSSVSWR++ + G G R D ++ S + S +NG
Sbjct: 537 MIRSNSSVSWRSSGTTG--------------GGLQRNSVDGYI-----SGKKKVSKAENG 577
Query: 247 LLRLYLTPGGGRRNGSGKGRANQAHSIARS 158
+L+ YLTPG GRR GSG A + + S
Sbjct: 578 MLKFYLTPGKGRRRGSGNSTAPTSRPVPAS 607
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,921,010
Number of Sequences: 1393205
Number of extensions: 16288530
Number of successful extensions: 61654
Number of sequences better than 10.0: 187
Number of HSP's better than 10.0 without gapping: 54140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60482
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
