Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018912A_C01 KMC018912A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09302.1| UDP-galactose phosphate transferase homolog [Camp... 35 0.77
gb|AAO51637.1| similar to Dictyostelium discoideum (Slime mold).... 33 2.2
ref|NP_693814.1| UDP-galactose phosphate transferase [Oceanobaci... 32 3.8
>gb|AAD09302.1| UDP-galactose phosphate transferase homolog [Campylobacter jejuni]
Length = 200
Score = 34.7 bits (78), Expect = 0.77
Identities = 18/62 (29%), Positives = 35/62 (56%)
Frame = -1
Query: 378 LKMLLLRMGKQR*RQKKRTNLGGFAEINDKNALNLKVCLNFSVM*YYYKTLPFFIFCLLL 199
++ L L G+Q+ R K R + G+A++N +NA++ + V YY K + F + ++
Sbjct: 115 VEYLSLYNGEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDV--YYVKNISFLLDLKIM 172
Query: 198 YL 193
+L
Sbjct: 173 FL 174
>gb|AAO51637.1| similar to Dictyostelium discoideum (Slime mold). MYOM protein
Length = 1144
Score = 33.1 bits (74), Expect = 2.2
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -3
Query: 538 SSLARSELENQNDPSSNGIGNTSTEIVHQQGATSN---GVPKAVVPPVATTSASMIPENV 368
S + N N+ S+N + TE+ S+ G + VV V A +I +NV
Sbjct: 387 SGTTTTTTNNNNNNSTNNLVGDKTELSSGSSVISSPNGGTKREVVIKVTRAFAQVIHQNV 446
Query: 367 VTENGEAKMK 338
+ E GE KM+
Sbjct: 447 MKEEGENKMR 456
>ref|NP_693814.1| UDP-galactose phosphate transferase [Oceanobacillus iheyensis
HTE831] gi|22778579|dbj|BAC14848.1| UDP-galactose
phosphate transferase [Oceanobacillus iheyensis]
Length = 215
Score = 32.3 bits (72), Expect = 3.8
Identities = 19/62 (30%), Positives = 32/62 (50%)
Frame = -1
Query: 378 LKMLLLRMGKQR*RQKKRTNLGGFAEINDKNALNLKVCLNFSVM*YYYKTLPFFIFCLLL 199
++ L L +Q+ R + R L G A+IN +NA+ K +F V Y + F + C +
Sbjct: 123 IRYLPLYNEQQKRRHEVRPGLSGLAQINGRNAIVWKQKFDFDVQ--YVDNISFLLDCKVF 180
Query: 198 YL 193
+L
Sbjct: 181 FL 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,335,389
Number of Sequences: 1393205
Number of extensions: 8606982
Number of successful extensions: 26238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 25496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26220
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
