>KMC018910A_C01 KMC018910A_c01
taaaaTGCAAGCTTAAATCTGCAACAAAAATGTGCATTACATAATCATAATACGTTCCCC
CAAAAACACCAATTTAACACTGAAGATTAAACCGTATAACATCCCAAACGCTACTACTCC
TACATATATATGTCACAACATTTGTCAAATCCAGGGAACTAGTTTGGGGGAACATCACAA
TCTGGTACATTACATATTACATCAATGACGACCATTACATAAGAATATGATGTGTGCTGA
TATAACTTACAAAAACCATATACACCGCAAGTTAACACAAATCAGAAGAGTCAGTCCGAA
TGAAAAGAAAATGGGGGTATTTTCCTCTCAAGTGGCGGGTCAGTACGATTGGACTGATAT
GTCTGCTGCGTTTGGGAGCTCAGTGATCTGGGGAGGAGCTGTTTTTGTTGCGGTATCCAC
TTTTGATCGTTCTTTGGTTTTGCAACTGCCATTGCTACTGTGCCGAATGGCCTGGTCCTT
GTTTCTTTGAGTGAGAGGAGTGTTAGAACCGCCTCTGATTCGGCTACCAGTGCTATGACG
TGCTCG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC018910A_C01 KMC018910A_c01
         (546 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_472300.1| similar to transcriptional regulator [Listeria ...    33  1.7
ref|NP_704294.1| ubiquitin-protein ligase 1, putative [Plasmodiu...    33  1.7
ref|NP_596167.1| chloride channel [Schizosaccharomyces pombe] gi...    33  2.9
ref|XP_219558.1| similar to hypothetical protein FLJ23392 [Homo ...    32  5.0
ref|NP_466364.1| similar to transcriptional regulator [Listeria ...    32  5.0

>ref|NP_472300.1| similar to transcriptional regulator [Listeria innocua]
           gi|25298151|pir||AG1803 transcription regulator homolog
           lin2974 [imported] - Listeria innocua (strain Clip11262)
           gi|16415514|emb|CAC98199.1| similar to transcriptional
           regulator [Listeria innocua]
          Length = 341

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 17  ICNKNVHYIIIIRSPKNTNLTLKIKPYNIPNATTPTYICH--NICQIQGTSLGEHHNLVH 190
           I  K +  II++ SP + +   ++ PYNIP   T     H  NI  +   + G+ + L  
Sbjct: 117 IQEKMIKGIIMLSSPADEDFFHQLDPYNIPIVVTGKVEGHYKNIYSVDTDNFGDSYALTK 176

Query: 191 YILHQ*RPLHKNMMCADITYKNHI 262
           +++ Q    HK + C       H+
Sbjct: 177 HLIKQ---GHKKIACIHAPLDYHV 197

>ref|NP_704294.1| ubiquitin-protein ligase 1, putative [Plasmodium falciparum 3D7]
            gi|23499033|emb|CAD51113.1| ubiquitin-protein ligase 1,
            putative [Plasmodium falciparum 3D7]
          Length = 8591

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 19/64 (29%), Positives = 38/64 (58%)
 Frame = +2

Query: 122  TYICHNICQIQGTSLGEHHNLVHYILHQ*RPLHKNMMCADITYKNHIHRKLTQIRRVSPN 301
            TYIC+N   I+G    + +NL++ I ++ + L++N    +   KN+  ++  ++++   N
Sbjct: 2266 TYICNNTGNIKGLESIDLNNLINIINNKNKTLNEN----NCDSKNYEGKEKNELKKNKFN 2321

Query: 302  EKKM 313
            EKKM
Sbjct: 2322 EKKM 2325

>ref|NP_596167.1| chloride channel [Schizosaccharomyces pombe] gi|7491472|pir||T39817
           hypothetical protein SPBC19C7.11 - fission yeast
           (Schizosaccharomyces pombe) gi|3218415|emb|CAA19579.1|
           ClC chloride channel [Schizosaccharomyces pombe]
          Length = 812

 Score = 32.7 bits (73), Expect = 2.9
 Identities = 14/38 (36%), Positives = 20/38 (51%)
 Frame = -3

Query: 139 VVTYICRSSSVWDVIRFNLQC*IGVFGGTYYDYVMHIF 26
           VV +  R S  W        C +G+FGG Y ++VM +F
Sbjct: 356 VVLFEVRYSGSWHFFELLFFCFLGIFGGLYGEFVMRLF 393

>ref|XP_219558.1| similar to hypothetical protein FLJ23392 [Homo sapiens] [Rattus
           norvegicus]
          Length = 475

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 21/56 (37%), Positives = 31/56 (54%), Gaps = 1/56 (1%)
 Frame = -1

Query: 456 SNGSCKTKERSKVDTATKTAPPQITELPNAADISVQSY*PAT*EENTPI-FFSFGL 292
           S G+  T+   +VD++   APP     P  AD+SV    P++  E TP+ +FS GL
Sbjct: 188 SGGADTTQPSMEVDSSHLRAPP-----PPVADVSVSLASPSSSTETTPVNYFSSGL 238

>ref|NP_466364.1| similar to transcriptional regulator [Listeria monocytogenes EGD-e]
           gi|25298153|pir||AI1429 transcription regulator homolog
           lmo2842 [imported] - Listeria monocytogenes (strain
           EGD-e) gi|16412342|emb|CAD01055.1| similar to
           transcriptional regulator [Listeria monocytogenes]
          Length = 341

 Score = 32.0 bits (71), Expect = 5.0
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +2

Query: 17  ICNKNVHYIIIIRSPKNTNLTLKIKPYNIPNATTPTYICH--NICQIQGTSLGEHHNLVH 190
           I  K +  II++ SP + +   ++ PYNIP   T     H  NI  +   + G+ + L  
Sbjct: 117 IQEKMIKGIIMLSSPADEDFFHQLDPYNIPIVVTGKVEGHYKNIYSVDTDNFGDSYALTK 176

Query: 191 YILHQ*RPLHKNMMCADITYKNHI 262
           +++ Q    H+ + C       H+
Sbjct: 177 HLIKQ---GHQKIACIHAPLDYHV 197

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,619,545
Number of Sequences: 1393205
Number of extensions: 10672187
Number of successful extensions: 33535
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33530
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MF057c01_f BP031281 1 546 2 SPD085a06_f BP050751 6 545

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