Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018903A_C01 KMC018903A_c01
(644 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL93111.1|AF414940_1 holocarboxylase synthetase hcs2.c [Arab... 159 2e-38
gb|AAL93106.1|AF414935_1 holocarboxylase synthetase 2 [Arabidops... 159 2e-38
ref|NP_565605.1| biotin holocarboxylase synthetase; protein id: ... 157 9e-38
gb|AAL93108.1|AF414937_1 holocarboxylase synthetase 1 [Arabidops... 157 9e-38
gb|AAL93109.1|AF414938_1 holocarboxylase synthetase hcs2.a [Arab... 152 4e-36
>gb|AAL93111.1|AF414940_1 holocarboxylase synthetase hcs2.c [Arabidopsis thaliana]
Length = 286
Score = 159 bits (403), Expect = 2e-38
Identities = 72/99 (72%), Positives = 89/99 (89%)
Frame = -2
Query: 643 RREDVLAAFCNKFEKLYGIFVNQGFQTLEELYYKTWLHSGQRVIVQENNEDKVIEHVVTI 464
+RE++L AF NKFE + +F+ QGF++LEELYY+TWLHSGQ+VI +E NED+V+++VVTI
Sbjct: 188 KREEILGAFFNKFENFFDLFMEQGFKSLEELYYRTWLHSGQKVIAEEKNEDQVVQNVVTI 247
Query: 463 QGLTSSGYLLAVGDDSQMCELHPDGNSFDFFKGLVRRKL 347
QGLTSSGYLLA+GDD+ M ELHPDGNSFDFFKGLVRRKL
Sbjct: 248 QGLTSSGYLLAIGDDNIMYELHPDGNSFDFFKGLVRRKL 286
>gb|AAL93106.1|AF414935_1 holocarboxylase synthetase 2 [Arabidopsis thaliana]
gi|19698363|gb|AAL93107.1|AF414936_1 holocarboxylase
synthetase 2 [Arabidopsis thaliana]
gi|19698369|gb|AAL93110.1|AF414939_1 holocarboxylase
synthetase hcs2.b [Arabidopsis thaliana]
Length = 246
Score = 159 bits (403), Expect = 2e-38
Identities = 72/99 (72%), Positives = 89/99 (89%)
Frame = -2
Query: 643 RREDVLAAFCNKFEKLYGIFVNQGFQTLEELYYKTWLHSGQRVIVQENNEDKVIEHVVTI 464
+RE++L AF NKFE + +F+ QGF++LEELYY+TWLHSGQ+VI +E NED+V+++VVTI
Sbjct: 148 KREEILGAFFNKFENFFDLFMEQGFKSLEELYYRTWLHSGQKVIAEEKNEDQVVQNVVTI 207
Query: 463 QGLTSSGYLLAVGDDSQMCELHPDGNSFDFFKGLVRRKL 347
QGLTSSGYLLA+GDD+ M ELHPDGNSFDFFKGLVRRKL
Sbjct: 208 QGLTSSGYLLAIGDDNIMYELHPDGNSFDFFKGLVRRKL 246
>ref|NP_565605.1| biotin holocarboxylase synthetase; protein id: At2g25710.1,
supported by cDNA: gi_1688071 [Arabidopsis thaliana]
gi|1688072|gb|AAC49706.1| biotin holocarboxylase
synthetase gi|20197509|gb|AAD31371.2| biotin
holocarboxylase synthetase [Arabidopsis thaliana]
Length = 367
Score = 157 bits (398), Expect = 9e-38
Identities = 72/99 (72%), Positives = 91/99 (91%)
Frame = -2
Query: 643 RREDVLAAFCNKFEKLYGIFVNQGFQTLEELYYKTWLHSGQRVIVQENNEDKVIEHVVTI 464
+RE++L AF +KFEK + +F++QGF++LEELYY+TWLHS QRVIV++ ED+V+++VVTI
Sbjct: 269 KREEILGAFFHKFEKFFDLFMDQGFKSLEELYYRTWLHSEQRVIVEDKVEDQVVQNVVTI 328
Query: 463 QGLTSSGYLLAVGDDSQMCELHPDGNSFDFFKGLVRRKL 347
QGLTSSGYLLAVGDD+QM ELHPDGNSFDFFKGLVRRK+
Sbjct: 329 QGLTSSGYLLAVGDDNQMYELHPDGNSFDFFKGLVRRKI 367
>gb|AAL93108.1|AF414937_1 holocarboxylase synthetase 1 [Arabidopsis thaliana]
Length = 367
Score = 157 bits (398), Expect = 9e-38
Identities = 72/99 (72%), Positives = 91/99 (91%)
Frame = -2
Query: 643 RREDVLAAFCNKFEKLYGIFVNQGFQTLEELYYKTWLHSGQRVIVQENNEDKVIEHVVTI 464
+RE++L AF +KFEK + +F++QGF++LEELYY+TWLHS QRVIV++ ED+V+++VVTI
Sbjct: 269 KREEILGAFFHKFEKFFDLFMDQGFKSLEELYYRTWLHSEQRVIVEDKVEDQVVQNVVTI 328
Query: 463 QGLTSSGYLLAVGDDSQMCELHPDGNSFDFFKGLVRRKL 347
QGLTSSGYLLAVGDD+QM ELHPDGNSFDFFKGLVRRK+
Sbjct: 329 QGLTSSGYLLAVGDDNQMYELHPDGNSFDFFKGLVRRKI 367
>gb|AAL93109.1|AF414938_1 holocarboxylase synthetase hcs2.a [Arabidopsis thaliana]
Length = 329
Score = 152 bits (384), Expect = 4e-36
Identities = 70/99 (70%), Positives = 87/99 (87%)
Frame = -2
Query: 643 RREDVLAAFCNKFEKLYGIFVNQGFQTLEELYYKTWLHSGQRVIVQENNEDKVIEHVVTI 464
+RE++L AF KFE + +F+ QGF++LEELYY+T LHSGQ+VI +E NED+V+++VVTI
Sbjct: 231 KREEILGAFFKKFENFFDLFMEQGFKSLEELYYRTCLHSGQKVIAEEKNEDQVVQNVVTI 290
Query: 463 QGLTSSGYLLAVGDDSQMCELHPDGNSFDFFKGLVRRKL 347
QGLTSSGYLLA+GDD+ M ELHPDGNSFDFFKGLVRRKL
Sbjct: 291 QGLTSSGYLLAIGDDNIMYELHPDGNSFDFFKGLVRRKL 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,876,700
Number of Sequences: 1393205
Number of extensions: 11708098
Number of successful extensions: 26125
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 25436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26100
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
