Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018902A_C01 KMC018902A_c01
(518 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182034.1| putative PREG1-like negative regulator; protein... 101 6e-21
ref|NP_191614.1| regulatory protein - like; protein id: At3g6055... 100 1e-20
pir||T52062 PREG-like protein [imported] - Picea mariana (fragme... 51 9e-06
ref|NP_200973.1| PREG-like - like protein; protein id: At5g61650... 46 3e-04
ref|NP_188825.1| PREG-like protein, putative; protein id: At3g21... 43 0.002
>ref|NP_182034.1| putative PREG1-like negative regulator; protein id: At2g45080.1,
supported by cDNA: gi_18491282 [Arabidopsis thaliana]
gi|25408923|pir||C84886 probable PREG1-like negative
regulator [imported] - Arabidopsis thaliana
gi|18491283|gb|AAL69466.1| At2g45080/T14P1.11
[Arabidopsis thaliana]
Length = 222
Score = 101 bits (251), Expect = 6e-21
Identities = 46/52 (88%), Positives = 50/52 (95%)
Frame = -1
Query: 518 LELEFLFLMGFKLHVNVSIFESYCCHLEREVSIGGGYHIERTLRCAEEIQTR 363
LELEFLFLMGFKLHVNVS+FESYCCHLEREVSIGGGY IE+ LRCAEEI++R
Sbjct: 152 LELEFLFLMGFKLHVNVSVFESYCCHLEREVSIGGGYQIEKALRCAEEIKSR 203
>ref|NP_191614.1| regulatory protein - like; protein id: At3g60550.1 [Arabidopsis
thaliana] gi|11358757|pir||T47866 regulatory
protein-like - Arabidopsis thaliana
gi|7288003|emb|CAB81841.1| regulatory protein-like
[Arabidopsis thaliana]
Length = 230
Score = 100 bits (248), Expect = 1e-20
Identities = 48/73 (65%), Positives = 57/73 (77%), Gaps = 6/73 (8%)
Frame = -1
Query: 518 LELEFLFLMGFKLHVNVSIFESYCCHLEREVSIGGGYHIERTLRCAEEIQTRH------R 357
LELEFLFLMGFKLHVNVS+FESYCCHLEREVS GGGY IE+ LRCAEEI++R +
Sbjct: 158 LELEFLFLMGFKLHVNVSVFESYCCHLEREVSFGGGYQIEKALRCAEEIKSRQMIIQDPK 217
Query: 356 EERGYTLIARVML 318
+ +AR++L
Sbjct: 218 HHHHHHQLARILL 230
>pir||T52062 PREG-like protein [imported] - Picea mariana (fragment)
gi|2982283|gb|AAC32127.1| PREG-like protein [Picea
mariana]
Length = 284
Score = 50.8 bits (120), Expect = 9e-06
Identities = 24/44 (54%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Frame = -1
Query: 518 LELEFLFLMGFKLHVNVSIFESYCCHLEREVSIG-GGYHIERTL 390
LE++FLF + F+L V S+FESYC HLE+E+ G G I+RTL
Sbjct: 191 LEVDFLFRLDFRLKVTASVFESYCLHLEKEMLCGASGQRIDRTL 234
>ref|NP_200973.1| PREG-like - like protein; protein id: At5g61650.1 [Arabidopsis
thaliana] gi|9758480|dbj|BAB09009.1| PREG regulatory
protein-like [Arabidopsis thaliana]
Length = 219
Score = 45.8 bits (107), Expect = 3e-04
Identities = 19/33 (57%), Positives = 28/33 (84%)
Frame = -1
Query: 518 LELEFLFLMGFKLHVNVSIFESYCCHLEREVSI 420
LEL+FLF +GF+L+V VS F +YCC L+RE+++
Sbjct: 143 LELDFLFGIGFELNVTVSTFNNYCCFLQREMAM 175
>ref|NP_188825.1| PREG-like protein, putative; protein id: At3g21870.1 [Arabidopsis
thaliana] gi|9294285|dbj|BAB02187.1| PREG1-like negative
regulator-like protein [Arabidopsis thaliana]
Length = 210
Score = 43.1 bits (100), Expect = 0.002
Identities = 17/33 (51%), Positives = 26/33 (78%)
Frame = -1
Query: 518 LELEFLFLMGFKLHVNVSIFESYCCHLEREVSI 420
+ELE LFL+ F++ V+ +FESYC HLE+E+ +
Sbjct: 150 MELELLFLLDFRVTVSFRVFESYCFHLEKEMQL 182
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,531,844
Number of Sequences: 1393205
Number of extensions: 7862489
Number of successful extensions: 16826
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16819
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
