Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018894A_C01 KMC018894A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98183.1| RAB11G [Lotus japonicus] 93 2e-18
emb|CAA54506.1| GTPase [Glycine max] 84 1e-15
pir||S52646 GTP-binding protein gmr2 - soybean 80 1e-14
emb|CAA54507.1| GTP binding protein [Glycine max] 80 2e-14
pir||S52647 GTP-binding protein gmr1 - soybean (fragment) 76 3e-13
>emb|CAA98183.1| RAB11G [Lotus japonicus]
Length = 219
Score = 93.2 bits (230), Expect = 2e-18
Identities = 46/47 (97%), Positives = 46/47 (97%)
Frame = -1
Query: 563 EIYNXVSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCST 423
EIYN VSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCST
Sbjct: 173 EIYNNVSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCST 219
>emb|CAA54506.1| GTPase [Glycine max]
Length = 219
Score = 84.0 bits (206), Expect = 1e-15
Identities = 40/46 (86%), Positives = 45/46 (96%)
Frame = -1
Query: 563 EIYNXVSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCS 426
EIYN VSRKVLNS+TYKAELSV+RVSLVNNGAATSKQ+++YFSCCS
Sbjct: 173 EIYNNVSRKVLNSETYKAELSVNRVSLVNNGAATSKQNQTYFSCCS 218
>pir||S52646 GTP-binding protein gmr2 - soybean
Length = 219
Score = 80.5 bits (197), Expect = 1e-14
Identities = 39/46 (84%), Positives = 44/46 (94%)
Frame = -1
Query: 563 EIYNXVSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCS 426
EIYN VSRKVLNS+TYKAELSV+RVSLVNNGAATSKQ+++Y SCCS
Sbjct: 173 EIYNNVSRKVLNSETYKAELSVNRVSLVNNGAATSKQNQTYQSCCS 218
>emb|CAA54507.1| GTP binding protein [Glycine max]
Length = 155
Score = 79.7 bits (195), Expect = 2e-14
Identities = 38/46 (82%), Positives = 43/46 (92%)
Frame = -1
Query: 563 EIYNXVSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCS 426
EIY VSRKVLNS+TYKAELSV+RVSLVNNGA+TSKQ++ YFSCCS
Sbjct: 109 EIYTNVSRKVLNSETYKAELSVNRVSLVNNGASTSKQNQPYFSCCS 154
>pir||S52647 GTP-binding protein gmr1 - soybean (fragment)
Length = 155
Score = 76.3 bits (186), Expect = 3e-13
Identities = 37/46 (80%), Positives = 42/46 (90%)
Frame = -1
Query: 563 EIYNXVSRKVLNSDTYKAELSVDRVSLVNNGAATSKQSKSYFSCCS 426
EIY VSRKVLNS+TYKAELSV+RVSLVNNGA+TSKQ++ Y SCCS
Sbjct: 109 EIYTNVSRKVLNSETYKAELSVNRVSLVNNGASTSKQNQPYQSCCS 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,915,096
Number of Sequences: 1393205
Number of extensions: 10303741
Number of successful extensions: 29668
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 27900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29589
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
