Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018890A_C01 KMC018890A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_612073.1| CG13908-PA [Drosophila melanogaster] gi|7292020... 40 0.016
ref|NP_490597.1| bromodomain-containing protein 4 isoform long; ... 32 0.018
gb|EAA06622.1| ebiP7346 [Anopheles gambiae str. PEST] 39 0.036
gb|AAO51497.1| similar to Mus musculus (Mouse). similar to CCR4... 38 0.081
pir||A59235 unconventional myosin heavy chain MyoM - slime mold ... 31 9.9
>ref|NP_612073.1| CG13908-PA [Drosophila melanogaster] gi|7292020|gb|AAF47434.1|
CG13908-PA [Drosophila melanogaster]
Length = 841
Score = 40.0 bits (92), Expect = 0.016
Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 430 QNPPPPRNHLQPRNHHHSPHHAT-APPH 510
Q PPPP +H Q R H HSPHH+ PH
Sbjct: 146 QQPPPPLHHCQQRKHSHSPHHSRHTSPH 173
>ref|NP_490597.1| bromodomain-containing protein 4 isoform long; similar to RING3;
chromosome-associated protein [Homo sapiens]
gi|20141192|sp|O60885|BRD4_HUMAN Bromodomain-containing
protein 4 (HUNK1 protein)
gi|16589003|gb|AAL26987.1|AF386649_1
bromodomain-containing 4 [Homo sapiens]
Length = 1362
Score = 32.0 bits (71), Expect = 4.5
Identities = 12/32 (37%), Positives = 17/32 (52%)
Frame = +3
Query: 405 HHHQNPLSPEPTPTKKPPSTQKSPPLSTPRHR 500
HH Q +P P P + PP Q+ PP P+ +
Sbjct: 742 HHQQMQQAPAPVPQQPPPPPQQPPPPPPPQQQ 773
Score = 30.0 bits (66), Expect(2) = 0.018
Identities = 13/29 (44%), Positives = 16/29 (54%), Gaps = 2/29 (6%)
Frame = +1
Query: 430 QNPPPPR--NHLQPRNHHHSPHHATAPPH 510
Q PPPP+ Q HHHSP H + P+
Sbjct: 1026 QQPPPPQPAKPQQVIQHHHSPRHHKSDPY 1054
Score = 28.9 bits (63), Expect(2) = 0.018
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +2
Query: 362 PIPHSNHNQHSLQSPPSPEPTQSRTHPHQE 451
P PH + Q Q PP P P Q + P Q+
Sbjct: 960 PPPHPSVQQQLQQQPPPPPPPQPQPPPQQQ 989
>gb|EAA06622.1| ebiP7346 [Anopheles gambiae str. PEST]
Length = 104
Score = 38.9 bits (89), Expect = 0.036
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = +1
Query: 355 LKSHPTLKPQPTLSPVSTITRTHSVQNPPPPRNHLQPRNHHHSPHHATAPPH 510
LK+H +LK +L+ ++T S++N P+NH P NH +H + H
Sbjct: 47 LKNHKSLKNHESLNNYKSLTYHESLKNHEAPKNHEAPNNHESLKNHESLKSH 98
>gb|AAO51497.1| similar to Mus musculus (Mouse). similar to CCR4-NOT transcription
complex, subunit 3 [Dictyostelium discoideum]
Length = 1015
Score = 37.7 bits (86), Expect = 0.081
Identities = 24/87 (27%), Positives = 35/87 (39%), Gaps = 13/87 (14%)
Frame = +3
Query: 291 NDGDDQVKHAAMVKGRSLVAXSEIPSHTQTTTNTLSSLHHHQNPLSPEPTPTKKP----- 455
NDG Q +H + +S S SH Q+ + S HHHQ P+P P +P
Sbjct: 556 NDGTYQQQHQQQQQQQSH-QQSHQQSHQQSQQQSQQSQHHHQQQPQPQPQPQPQPQPQPQ 614
Query: 456 --------PSTQKSPPLSTPRHRTTSY 512
P Q P P+H++ +
Sbjct: 615 PQPQPQPQPQPQPQPQQQQPQHQSQQH 641
Score = 32.0 bits (71), Expect = 4.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 367 PTLKPQPTLSPVSTITRTHSVQNPPPPRNHLQPRNHHHSPHH 492
P +PQP P + S Q+ P P+ QP+ H P+H
Sbjct: 619 PQPQPQPQPQPQQQQPQHQSQQHQPQPQQPQQPQQPQHQPYH 660
>pir||A59235 unconventional myosin heavy chain MyoM - slime mold (Dictyostelium
discoideum) gi|5714396|gb|AAD47903.1|AF090533_1
unconventional myosin heavy chain MyoM [Dictyostelium
discoideum] gi|5922602|dbj|BAA84604.1| myoM
[Dictyostelium discoideum]
Length = 1737
Score = 30.8 bits (68), Expect = 9.9
Identities = 36/128 (28%), Positives = 50/128 (38%), Gaps = 2/128 (1%)
Frame = +3
Query: 144 QERKKKTRRE--RERG*ENEKKGMNAPK*W*SLILPIFSPFFHLGIVDFTQNDGDDQVKH 317
QERKKK +E ++R E +KK N +L LP +D T +
Sbjct: 1009 QERKKKEEKEIEKKRKEEEKKKKKNEQ----NLSLPS---------LDITNSP------- 1048
Query: 318 AAMVKGRSLVAXSEIPSHTQTTTNTLSSLHHHQNPLSPEPTPTKKPPSTQKSPPLSTPRH 497
S I + T TTT T ++ + PLSP +P PS+ S +T
Sbjct: 1049 ------------SLINTTTTTTTTTTTTTNTSSPPLSPPISPRPSTPSSTSSSSSTTSSP 1096
Query: 498 RTTSYHLF 521
T LF
Sbjct: 1097 STKKQLLF 1104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,646,348
Number of Sequences: 1393205
Number of extensions: 14320219
Number of successful extensions: 116875
Number of sequences better than 10.0: 454
Number of HSP's better than 10.0 without gapping: 71365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106847
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
