Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018881A_C01 KMC018881A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190037.1| putative protein; protein id: At3g44510.1 [Arab... 189 2e-47
ref|NP_172308.1| unknown protein; protein id: At1g08310.1 [Arabi... 165 5e-40
pir||A86217 protein T23G18.18 [imported] - Arabidopsis thaliana ... 165 5e-40
ref|NP_190412.1| putative protein; protein id: At3g48410.1, supp... 145 3e-34
ref|NP_565841.1| expressed protein; protein id: At2g36290.1, sup... 129 3e-29
>ref|NP_190037.1| putative protein; protein id: At3g44510.1 [Arabidopsis thaliana]
gi|11357434|pir||T48931 hypothetical protein F14L2.60 -
Arabidopsis thaliana gi|7635473|emb|CAB88533.1| putative
protein [Arabidopsis thaliana]
Length = 198
Score = 189 bits (480), Expect = 2e-47
Identities = 89/151 (58%), Positives = 114/151 (74%), Gaps = 4/151 (2%)
Frame = -1
Query: 589 VSQKWLPSNSVIEKNPAFFNGRDIDILKRIPGFPMLTKDKLRDQVVFDTLRGDWLVAFGN 410
V+Q + S++EKNP +FN +DI++LK I GFPMLTK+KLR++ VF TLR D+LVAFG+
Sbjct: 45 VTQNMFSTTSMLEKNPVYFNDQDIEVLKHIKGFPMLTKEKLRERGVFGTLRSDFLVAFGD 104
Query: 409 WEFDPMKLSSPF----PHNKSSVHIWQGYEDKVVPSKIQRYVSEKLPWIQYHEVPDGGHL 242
W+FDP L P SSVHIWQGYEDKV+P ++QR + KLPWI+YHEVP GGHL
Sbjct: 105 WDFDPADLPDPSLSGPEKGSSSVHIWQGYEDKVMPFQLQRCLCRKLPWIRYHEVPKGGHL 164
Query: 241 VVHYSGIFEAILKALLLGEENLSYKPRPAIS 149
+VHY GI +AILK+LLLGE+ YKP+ I+
Sbjct: 165 IVHYDGICDAILKSLLLGEDLPMYKPKAVIT 195
>ref|NP_172308.1| unknown protein; protein id: At1g08310.1 [Arabidopsis thaliana]
Length = 292
Score = 165 bits (417), Expect = 5e-40
Identities = 79/138 (57%), Positives = 101/138 (72%), Gaps = 1/138 (0%)
Frame = -1
Query: 592 WVSQKWLPS-NSVIEKNPAFFNGRDIDILKRIPGFPMLTKDKLRDQVVFDTLRGDWLVAF 416
W+ QK S +SV+E NP +FN DI++LKR GFPMLTK+KLR++ VFDTLR D++V F
Sbjct: 150 WIIQKLFASTSSVLESNPVYFNSHDIEVLKRKTGFPMLTKEKLRERNVFDTLRDDFMVCF 209
Query: 415 GNWEFDPMKLSSPFPHNKSSVHIWQGYEDKVVPSKIQRYVSEKLPWIQYHEVPDGGHLVV 236
G W+F+P LS KS +HIW G EDKVVP ++QR + +K P I YHE+P GGHL+V
Sbjct: 210 GQWDFEPADLSI---STKSYIHIWHGKEDKVVPFQLQRCILQKQPLINYHEIPQGGHLIV 266
Query: 235 HYSGIFEAILKALLLGEE 182
HY GI + IL+ALLL EE
Sbjct: 267 HYDGICDTILRALLLKEE 284
>pir||A86217 protein T23G18.18 [imported] - Arabidopsis thaliana
gi|6579201|gb|AAF18244.1|AC011438_6 T23G18.18
[Arabidopsis thaliana]
Length = 382
Score = 165 bits (417), Expect = 5e-40
Identities = 79/138 (57%), Positives = 101/138 (72%), Gaps = 1/138 (0%)
Frame = -1
Query: 592 WVSQKWLPS-NSVIEKNPAFFNGRDIDILKRIPGFPMLTKDKLRDQVVFDTLRGDWLVAF 416
W+ QK S +SV+E NP +FN DI++LKR GFPMLTK+KLR++ VFDTLR D++V F
Sbjct: 150 WIIQKLFASTSSVLESNPVYFNSHDIEVLKRKTGFPMLTKEKLRERNVFDTLRDDFMVCF 209
Query: 415 GNWEFDPMKLSSPFPHNKSSVHIWQGYEDKVVPSKIQRYVSEKLPWIQYHEVPDGGHLVV 236
G W+F+P LS KS +HIW G EDKVVP ++QR + +K P I YHE+P GGHL+V
Sbjct: 210 GQWDFEPADLSI---STKSYIHIWHGKEDKVVPFQLQRCILQKQPLINYHEIPQGGHLIV 266
Query: 235 HYSGIFEAILKALLLGEE 182
HY GI + IL+ALLL EE
Sbjct: 267 HYDGICDTILRALLLKEE 284
>ref|NP_190412.1| putative protein; protein id: At3g48410.1, supported by cDNA:
gi_17529095 [Arabidopsis thaliana]
gi|7487537|pir||T06701 hypothetical protein T29H11.70 -
Arabidopsis thaliana gi|4678347|emb|CAB41157.1| putative
protein [Arabidopsis thaliana]
gi|17529096|gb|AAL38758.1| unknown protein [Arabidopsis
thaliana]
Length = 385
Score = 145 bits (367), Expect = 3e-34
Identities = 67/140 (47%), Positives = 95/140 (67%)
Frame = -1
Query: 592 WVSQKWLPSNSVIEKNPAFFNGRDIDILKRIPGFPMLTKDKLRDQVVFDTLRGDWLVAFG 413
W +QKW P ++VI NP F+ +D++IL ++ GF + +R Q + +L D VAF
Sbjct: 240 WNTQKWFPISNVIAGNPIIFSRQDMEILSKL-GFVNPNRAYIRQQGEYVSLHRDLNVAFS 298
Query: 412 NWEFDPMKLSSPFPHNKSSVHIWQGYEDKVVPSKIQRYVSEKLPWIQYHEVPDGGHLVVH 233
+WEFDP+ L PFP+N SVH+W G EDK VP K+QRYV+ KLPWI+YHE+ GH V
Sbjct: 299 SWEFDPLDLQDPFPNNNGSVHVWNGDEDKFVPVKLQRYVASKLPWIRYHEISGSGHFVPF 358
Query: 232 YSGIFEAILKALLLGEENLS 173
G+ + I+K+LL+GEE++S
Sbjct: 359 VEGMTDKIIKSLLVGEEDVS 378
>ref|NP_565841.1| expressed protein; protein id: At2g36290.1, supported by cDNA:
5167. [Arabidopsis thaliana] gi|25408458|pir||H84778
hypothetical protein At2g36290 [imported] - Arabidopsis
thaliana gi|4510348|gb|AAD21437.1| expressed protein
[Arabidopsis thaliana]
Length = 364
Score = 129 bits (324), Expect = 3e-29
Identities = 57/136 (41%), Positives = 85/136 (61%)
Frame = -1
Query: 592 WVSQKWLPSNSVIEKNPAFFNGRDIDILKRIPGFPMLTKDKLRDQVVFDTLRGDWLVAFG 413
W SQ W P +SV+ +N + D +I+ ++ + ++R Q +TL D +V FG
Sbjct: 225 WNSQSWFPGSSVVARNLGMLSKADKEIMFKLGAARSQHEAQIRQQGTHETLHRDMIVGFG 284
Query: 412 NWEFDPMKLSSPFPHNKSSVHIWQGYEDKVVPSKIQRYVSEKLPWIQYHEVPDGGHLVVH 233
WEFDPM+L + FP+N+ SVH+WQG +D +VP +QRY+++KLPWI YHE+P GHL
Sbjct: 285 TWEFDPMELENLFPNNEGSVHLWQGDDDVLVPVTLQRYIAKKLPWIHYHEIPGAGHLFPF 344
Query: 232 YSGIFEAILKALLLGE 185
G+ I+K LL +
Sbjct: 345 APGMVNNIVKTLLTND 360
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,440,057
Number of Sequences: 1393205
Number of extensions: 11600532
Number of successful extensions: 26460
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 25855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26434
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
