Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018858A_C01 KMC018858A_c01
(424 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565280.1| expressed protein; protein id: At2g02050.1, sup... 145 9e-35
dbj|BAC42587.1| unknown protein [Arabidopsis thaliana] 143 6e-34
dbj|BAA85408.1| ESTs AU078175(C51476),AU068986(C51476) correspon... 133 4e-31
gb|AAN17398.1| Unknown protein [Oryza sativa (japonica cultivar-... 133 4e-31
gb|EAA28195.1| hypothetical protein [Neurospora crassa] 99 2e-20
>ref|NP_565280.1| expressed protein; protein id: At2g02050.1, supported by cDNA:
39285., supported by cDNA: gi_11908121, supported by
cDNA: gi_13265394, supported by cDNA: gi_15529287
[Arabidopsis thaliana] gi|25410957|pir||D84432
hypothetical protein At2g02050 [imported] - Arabidopsis
thaliana gi|4406787|gb|AAD20097.1| expressed protein
[Arabidopsis thaliana]
gi|11692816|gb|AAG40011.1|AF324660_1 At2g02050
[Arabidopsis thaliana]
gi|11908122|gb|AAG41490.1|AF326908_1 unknown protein
[Arabidopsis thaliana]
gi|12642932|gb|AAK00408.1|AF339726_1 unknown protein
[Arabidopsis thaliana] gi|15529288|gb|AAK97738.1|
At2g02050/F14H20.12 [Arabidopsis thaliana]
gi|21593473|gb|AAM65440.1| unknown [Arabidopsis
thaliana] gi|23505757|gb|AAN28738.1| At2g02050/F14H20.12
[Arabidopsis thaliana]
Length = 103
Score = 145 bits (367), Expect = 9e-35
Identities = 71/97 (73%), Positives = 76/97 (78%)
Frame = +2
Query: 2 SKKMIATPEEMVEARVPLAYRDECAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELV 181
SKKMIAT EEM A++ L RD CAHLLIPLNKCRQAEFYLPWKCE+ERH YEKCEYELV
Sbjct: 7 SKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYEKCEYELV 66
Query: 182 MERMLQMKKIREQSKQTLPQAAAGGASVPLIPKPANA 292
MERML MKKIRE+ G A+VPLIPK ANA
Sbjct: 67 MERMLAMKKIREEEALAKQNKLQGNAAVPLIPKTANA 103
>dbj|BAC42587.1| unknown protein [Arabidopsis thaliana]
Length = 103
Score = 143 bits (360), Expect = 6e-34
Identities = 70/97 (72%), Positives = 75/97 (77%)
Frame = +2
Query: 2 SKKMIATPEEMVEARVPLAYRDECAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELV 181
SKKMIAT EEM A++ L RD CAHLLIPLNKCRQAEFYLPWKCE+ERH Y KCEYELV
Sbjct: 7 SKKMIATQEEMSAAKIALGSRDMCAHLLIPLNKCRQAEFYLPWKCEDERHVYGKCEYELV 66
Query: 182 MERMLQMKKIREQSKQTLPQAAAGGASVPLIPKPANA 292
MERML MKKIRE+ G A+VPLIPK ANA
Sbjct: 67 MERMLAMKKIREEEALAKQNKLQGNAAVPLIPKAANA 103
>dbj|BAA85408.1| ESTs AU078175(C51476),AU068986(C51476) correspond to a region of
the predicted gene.~similar to NADH dehydrogenase.
(AC006532) [Oryza sativa (japonica cultivar-group)]
Length = 181
Score = 133 bits (335), Expect = 4e-31
Identities = 66/95 (69%), Positives = 74/95 (77%)
Frame = +2
Query: 2 SKKMIATPEEMVEARVPLAYRDECAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELV 181
SK IAT EM EAR+PL YRD+CAHLLIPLNKCR AE+YLPWKCE ERH+YEKC+YELV
Sbjct: 86 SKPQIATQAEMSEARLPLPYRDQCAHLLIPLNKCRVAEYYLPWKCEPERHAYEKCQYELV 145
Query: 182 MERMLQMKKIREQSKQTLPQAAAGGASVPLIPKPA 286
MERM+QM+KIRE + AA G VPLIP A
Sbjct: 146 MERMIQMQKIREAQEAKSKGAATIG--VPLIPSTA 178
>gb|AAN17398.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 109
Score = 133 bits (335), Expect = 4e-31
Identities = 66/95 (69%), Positives = 74/95 (77%)
Frame = +2
Query: 2 SKKMIATPEEMVEARVPLAYRDECAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELV 181
SK IAT EM EAR+PL YRD+CAHLLIPLNKCR AE+YLPWKCE ERH+YEKC+YELV
Sbjct: 14 SKPQIATQAEMSEARLPLPYRDQCAHLLIPLNKCRVAEYYLPWKCEPERHAYEKCQYELV 73
Query: 182 MERMLQMKKIREQSKQTLPQAAAGGASVPLIPKPA 286
MERM+QM+KIRE + AA G VPLIP A
Sbjct: 74 MERMIQMQKIREAQEAKSKGAATIG--VPLIPSTA 106
>gb|EAA28195.1| hypothetical protein [Neurospora crassa]
Length = 776
Score = 98.6 bits (244), Expect = 2e-20
Identities = 46/81 (56%), Positives = 59/81 (72%)
Frame = +2
Query: 17 ATPEEMVEARVPLAYRDECAHLLIPLNKCRQAEFYLPWKCENERHSYEKCEYELVMERML 196
AT EEM +A++PLAYRD CAHLLIPLN+CR +YLPWKCE+ERH+YEKC+Y +R+
Sbjct: 702 ATREEMRDAKLPLAYRDSCAHLLIPLNRCRYDTYYLPWKCEDERHTYEKCQYVEFKKRVA 761
Query: 197 QMKKIREQSKQTLPQAAAGGA 259
+M ++R AA GGA
Sbjct: 762 KMDELR---------AAKGGA 773
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,909,239
Number of Sequences: 1393205
Number of extensions: 8230841
Number of successful extensions: 35142
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 32079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34962
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 6889859208
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
