Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018849A_C01 KMC018849A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG50697.1|AC079604_4 hypothetical protein [Arabidopsis thali... 161 5e-39
ref|NP_176109.1| hypothetical protein; protein id: At1g58120.1 [... 161 5e-39
dbj|BAC10179.1| contains ESTs C72105(E1001),AU101116(E1001)~simi... 124 7e-28
ref|NP_195791.1| putative protein; protein id: At5g01710.1, supp... 75 4e-13
ref|NP_190908.1| putative protein; protein id: At3g53400.1, supp... 53 3e-06
>gb|AAG50697.1|AC079604_4 hypothetical protein [Arabidopsis thaliana]
gi|26451877|dbj|BAC43031.1| unknown protein [Arabidopsis
thaliana]
Length = 420
Score = 161 bits (407), Expect = 5e-39
Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 10/157 (6%)
Frame = -3
Query: 537 KKIKYLPELLGDSL--EGYNRRLFISAGLLSKENKGVIEWFERNYPKKDTKFEIHSLLFV 364
K+ +YLP+L+GD+L E Y+RR+FI G + + +EWF NYP ++ KFE++ + V
Sbjct: 266 KRTRYLPDLMGDNLDLESYSRRVFIDVG--NGKGSSGMEWFVENYPTRNQKFEMYKIETV 323
Query: 363 PEDDN------DVSAWLSKHVKEEEYVVMKAEAEVVEEMIKERTIYLVDELFLECKNEWW 202
++ + ++ WL ++VKEEEYVVMKAEAE+VEEM++ ++I +VDELFLECK +
Sbjct: 324 NDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKMVDELFLECKPKGL 383
Query: 201 QKKGKR--KKSRRAYWECLALYGRLRDEGVAVHPWWG 97
+G++ KS RAYWECLALYG+LRDEGVAVH WWG
Sbjct: 384 GLRGRKMQSKSGRAYWECLALYGKLRDEGVAVHQWWG 420
>ref|NP_176109.1| hypothetical protein; protein id: At1g58120.1 [Arabidopsis
thaliana] gi|25404192|pir||E96614 hypothetical protein
T18I24.4 [imported] - Arabidopsis thaliana
gi|12321385|gb|AAG50763.1|AC079131_8 hypothetical
protein [Arabidopsis thaliana]
Length = 420
Score = 161 bits (407), Expect = 5e-39
Identities = 81/157 (51%), Positives = 114/157 (72%), Gaps = 10/157 (6%)
Frame = -3
Query: 537 KKIKYLPELLGDSL--EGYNRRLFISAGLLSKENKGVIEWFERNYPKKDTKFEIHSLLFV 364
K+ +YLP+L+GD+L E Y+RR+FI G + + +EWF NYP ++ KFE++ + V
Sbjct: 266 KRTRYLPDLMGDNLDLESYSRRVFIDVG--NGKGSSGMEWFVENYPTRNQKFEMYKIETV 323
Query: 363 PEDDN------DVSAWLSKHVKEEEYVVMKAEAEVVEEMIKERTIYLVDELFLECKNEWW 202
++ + ++ WL ++VKEEEYVVMKAEAE+VEEM++ ++I +VDELFLECK +
Sbjct: 324 NDEMSLESEKMGMTEWLKENVKEEEYVVMKAEAEMVEEMMRSKSIKMVDELFLECKPKGL 383
Query: 201 QKKGKR--KKSRRAYWECLALYGRLRDEGVAVHPWWG 97
+G++ KS RAYWECLALYG+LRDEGVAVH WWG
Sbjct: 384 GLRGRKMQSKSGRAYWECLALYGKLRDEGVAVHQWWG 420
>dbj|BAC10179.1| contains ESTs C72105(E1001),AU101116(E1001)~similarto Arabidopsis
thaliana chromosome 1 T15M6.13~unknown protein [Oryza
sativa (japonica cultivar-group)]
Length = 414
Score = 124 bits (311), Expect = 7e-28
Identities = 68/151 (45%), Positives = 87/151 (57%), Gaps = 8/151 (5%)
Frame = -3
Query: 528 KYLPELLGDSLEGYNRRLFISAGLLSKENKGVIEWFERNYPKKDTKFEIHSLLFVPEDDN 349
+YLPEL GDSLEGY RR FI G WF+++YP+ F++ L +
Sbjct: 229 RYLPELTGDSLEGYRRRTFIDVA--PSRGGGAASWFKKHYPRGKRVFDMVRLDAADATEP 286
Query: 348 DVSA-------WLSKHVKEEEYVVMKAEAEVVEEMIKERT-IYLVDELFLECKNEWWQKK 193
S+ WL +V+EE+YVV+KA E VEE+++ R + VDELFL+C
Sbjct: 287 AASSSAAGIAEWLEGNVREEDYVVVKAGVEAVEEILRRRAAVRRVDELFLDC-----DAG 341
Query: 192 GKRKKSRRAYWECLALYGRLRDEGVAVHPWW 100
+RR YWECLALYGRLRD GVAVH WW
Sbjct: 342 AGADAARRPYWECLALYGRLRDHGVAVHQWW 372
>ref|NP_195791.1| putative protein; protein id: At5g01710.1, supported by cDNA:
gi_15810368 [Arabidopsis thaliana]
gi|11357829|pir||T48192 hypothetical protein F7A7.230 -
Arabidopsis thaliana gi|7327830|emb|CAB82287.1| putative
protein [Arabidopsis thaliana]
gi|15810369|gb|AAL07072.1| unknown protein [Arabidopsis
thaliana] gi|23296924|gb|AAN13203.1| unknown protein
[Arabidopsis thaliana] gi|24417484|gb|AAN60352.1|
unknown [Arabidopsis thaliana]
Length = 513
Score = 75.5 bits (184), Expect = 4e-13
Identities = 39/91 (42%), Positives = 54/91 (58%), Gaps = 8/91 (8%)
Frame = -3
Query: 348 DVSAWLSKHVKEEEYVVMKAEAE-----VVEEMIKERTIYLVDELFLECKNEWWQK--KG 190
D + WL K V+E ++VVMK + E ++ +IK I L+DELFLEC WQ+ G
Sbjct: 423 DFADWLKKSVRERDFVVMKMDVEGTEFDLIPRLIKTGAICLIDELFLECHYNRWQRCCPG 482
Query: 189 KR-KKSRRAYWECLALYGRLRDEGVAVHPWW 100
+R +K + Y +CL L+ LR GV VH WW
Sbjct: 483 QRSQKYNKTYNQCLELFNSLRQRGVLVHQWW 513
Score = 32.7 bits (73), Expect = 2.9
Identities = 14/56 (25%), Positives = 32/56 (57%)
Frame = -3
Query: 540 LKKIKYLPELLGDSLEGYNRRLFISAGLLSKENKGVIEWFERNYPKKDTKFEIHSL 373
+K IKY+P ++ + +R +++ G S + WF++ YPK++ F++ ++
Sbjct: 295 IKNIKYVPSMV--DIRFKSRYVYVDVGARSY-GSSIGSWFKKEYPKQNKTFDVFAI 347
>ref|NP_190908.1| putative protein; protein id: At3g53400.1, supported by cDNA:
gi_17528947 [Arabidopsis thaliana]
gi|11282324|pir||T45880 hypothetical protein F4P12.100 -
Arabidopsis thaliana gi|6729491|emb|CAB67647.1| putative
protein [Arabidopsis thaliana]
Length = 466
Score = 52.8 bits (125), Expect = 3e-06
Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 5/99 (5%)
Frame = -3
Query: 381 HSLLFVPEDDNDVSAWLSKHVKEEEYVVMK-----AEAEVVEEMIKERTIYLVDELFLEC 217
H FV +D D AW + ++VV+K E + + E+IK I VDELFL C
Sbjct: 381 HEEPFVEDDSFDFLAWFKETASFADFVVLKMNTSDTELKFLSELIKTGAICSVDELFLHC 440
Query: 216 KNEWWQKKGKRKKSRRAYWECLALYGRLRDEGVAVHPWW 100
Y +C + LR+ GV VH WW
Sbjct: 441 ---------------TGYSDCTGIIKSLRNSGVFVHQWW 464
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,389,333
Number of Sequences: 1393205
Number of extensions: 12049958
Number of successful extensions: 46500
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 41614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45564
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
