Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018841A_C01 KMC018841A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB84415.1| putative NADH dehydrogenase (ubiquinone) chain P... 129 3e-29
ref|NP_196738.1| NADH dehydrogenase (ubiquinone); protein id: At... 128 5e-29
sp|P42027|NUKM_BRAOL NADH-ubiquinone oxidoreductase 20 kDa subun... 128 5e-29
gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupi... 125 3e-28
pir||T44818 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 125 3e-28
>dbj|BAB84415.1| putative NADH dehydrogenase (ubiquinone) chain PSST precursor
[Oryza sativa (japonica cultivar-group)]
Length = 199
Score = 129 bits (323), Expect = 3e-29
Identities = 57/59 (96%), Positives = 58/59 (97%)
Frame = -1
Query: 562 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIYRRKDFLHWWT 386
ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG+LQLQKKI RRKDFLHWWT
Sbjct: 140 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGVLQLQKKINRRKDFLHWWT 198
>ref|NP_196738.1| NADH dehydrogenase (ubiquinone); protein id: At5g11770.1, supported
by cDNA: 13161., supported by cDNA: gi_15810286,
supported by cDNA: gi_20466763 [Arabidopsis thaliana]
gi|2499327|sp|Q42577|NUKM_ARATH NADH-ubiquinone
oxidoreductase 20 kDa subunit, mitochondrial precursor
(Complex I-20KD) (CI-20KD) gi|1084345|pir||S52286 NADH2
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - Arabidopsis thaliana
gi|643090|emb|CAA58887.1| NADH dehydrogenase;
mitochondrial PSST subunit of NADH: ubuquitone
oxidoreductase (complex I) [Arabidopsis thaliana]
gi|7573391|emb|CAB87695.1| NADH dehydrogenase
(ubiquinone) [Arabidopsis thaliana]
gi|15810287|gb|AAL07031.1| putative NADH dehydrogenase
(ubiquinone) [Arabidopsis thaliana]
gi|16226316|gb|AAL16132.1|AF428300_1
AT5g11770/T22P22_160 [Arabidopsis thaliana]
gi|20466764|gb|AAM20699.1| NADH dehydrogenase /
ubiquinone [Arabidopsis thaliana]
gi|21537333|gb|AAM61674.1| NADH dehydrogenase ubiquinone
[Arabidopsis thaliana] gi|22136468|gb|AAM91312.1| NADH
dehydrogenase / ubiquinone [Arabidopsis thaliana]
Length = 218
Score = 128 bits (321), Expect = 5e-29
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = -1
Query: 562 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIYRRKDFLHWW 389
ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI RRKDFLHWW
Sbjct: 159 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWW 216
>sp|P42027|NUKM_BRAOL NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial
precursor (Complex I-20KD) (CI-20KD)
gi|629601|pir||S48826 NADH2 dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain PSST precursor - wild cabbage
gi|562282|emb|CAA57725.1| PSST subunit of NADH:
ubiquinone oxidoreductase [Brassica oleracea]
Length = 215
Score = 128 bits (321), Expect = 5e-29
Identities = 57/58 (98%), Positives = 57/58 (98%)
Frame = -1
Query: 562 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIYRRKDFLHWW 389
ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI RRKDFLHWW
Sbjct: 156 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLHWW 213
>gb|AAF91434.1| NADH-ubiquinone oxidoreductase subunit PSST [Lupinus luteus]
Length = 192
Score = 125 bits (315), Expect = 3e-28
Identities = 57/59 (96%), Positives = 57/59 (96%)
Frame = -1
Query: 562 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIYRRKDFLHWWT 386
ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI RRKDFL WWT
Sbjct: 133 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWT 191
>pir||T44818 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor
[imported] - yellow lupine gi|6007781|gb|AAF01037.1|
NADH ubiquinone oxidoreductase PSST subunit [Lupinus
luteus]
Length = 213
Score = 125 bits (315), Expect = 3e-28
Identities = 57/59 (96%), Positives = 57/59 (96%)
Frame = -1
Query: 562 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIYRRKDFLHWWT 386
ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI RRKDFL WWT
Sbjct: 154 ANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKINRRKDFLLWWT 212
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,881,493
Number of Sequences: 1393205
Number of extensions: 12231841
Number of successful extensions: 29453
Number of sequences better than 10.0: 233
Number of HSP's better than 10.0 without gapping: 28175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29444
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
