Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018836A_C01 KMC018836A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C84718 probable kinesin light chain [imported] - Arabidopsi... 125 3e-28
ref|NP_180682.2| putative kinesin light chain; protein id: At2g3... 125 3e-28
gb|AAN87741.1| Hypothetical protein [Oryza sativa (japonica cult... 82 7e-15
gb|AAM13438.1|AF474071_1 similar to A. thaliana protein BAB01483... 49 6e-05
gb|AAL87157.1|AF480496_11 putative kinesin light chain gene [Ory... 45 5e-04
>pir||C84718 probable kinesin light chain [imported] - Arabidopsis thaliana
gi|4432819|gb|AAD20669.1| putative kinesin light chain
[Arabidopsis thaliana]
Length = 510
Score = 125 bits (315), Expect = 3e-28
Identities = 65/102 (63%), Positives = 80/102 (77%), Gaps = 2/102 (1%)
Frame = -3
Query: 589 AAQMFAVAKDIMDVSLGPHHADTIEACPNLSKAYGEMGSYVLAAEFQQQVIDAWASHGAS 410
AAQMFAVAKDIMDVSLGP+H D+I+AC NLSKAY MG+Y LA EFQQ+VI+AW +HG S
Sbjct: 409 AAQMFAVAKDIMDVSLGPNHVDSIDACQNLSKAYAGMGNYSLAVEFQQRVINAWDNHGDS 468
Query: 409 AEDELGEARRLLEELKKKARDASANVPM--KALPLPYTPEAS 290
A+DE+ EA+RLLE+L+ KAR + + KALPLP +S
Sbjct: 469 AKDEMKEAKRLLEDLRLKARGGVSTNKLLNKALPLPKPSHSS 510
>ref|NP_180682.2| putative kinesin light chain; protein id: At2g31240.1, supported by
cDNA: gi_17380951 [Arabidopsis thaliana]
gi|17380952|gb|AAL36288.1| putative kinesin light chain
[Arabidopsis thaliana]
Length = 617
Score = 125 bits (315), Expect = 3e-28
Identities = 65/102 (63%), Positives = 80/102 (77%), Gaps = 2/102 (1%)
Frame = -3
Query: 589 AAQMFAVAKDIMDVSLGPHHADTIEACPNLSKAYGEMGSYVLAAEFQQQVIDAWASHGAS 410
AAQMFAVAKDIMDVSLGP+H D+I+AC NLSKAY MG+Y LA EFQQ+VI+AW +HG S
Sbjct: 516 AAQMFAVAKDIMDVSLGPNHVDSIDACQNLSKAYAGMGNYSLAVEFQQRVINAWDNHGDS 575
Query: 409 AEDELGEARRLLEELKKKARDASANVPM--KALPLPYTPEAS 290
A+DE+ EA+RLLE+L+ KAR + + KALPLP +S
Sbjct: 576 AKDEMKEAKRLLEDLRLKARGGVSTNKLLNKALPLPKPSHSS 617
>gb|AAN87741.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 556
Score = 81.6 bits (200), Expect = 7e-15
Identities = 44/96 (45%), Positives = 62/96 (63%), Gaps = 1/96 (1%)
Frame = -3
Query: 589 AAQMFAVAKDIMDVSLGPHHADTIEACPNLSKAYGEMGSYVLAAEFQQQVIDAWASHGAS 410
A + F +AKDI++ + GP H DTI+ +++ AYG MGSY A ++Q+QVIDA+ S G
Sbjct: 457 AIKYFTIAKDIINATYGPKHEDTIDTIQSIANAYGVMGSYKQAMDYQEQVIDAYESCGPG 516
Query: 409 AEDELGEARRLLEELKKKARD-ASANVPMKALPLPY 305
A +EL EA+RL +LK KAR A P +LP +
Sbjct: 517 AFEELREAQRLRYQLKIKARGLPHACFPANSLPTKF 552
>gb|AAM13438.1|AF474071_1 similar to A. thaliana protein BAB01483 similar to kinesin light
chain [Hordeum vulgare subsp. vulgare]
Length = 708
Score = 48.5 bits (114), Expect = 6e-05
Identities = 25/79 (31%), Positives = 43/79 (53%)
Frame = -3
Query: 589 AAQMFAVAKDIMDVSLGPHHADTIEACPNLSKAYGEMGSYVLAAEFQQQVIDAWASHGAS 410
AA++F A+ +++ GP+HADT+ NL+ Y MG A E + V++ +
Sbjct: 600 AAELFEEARTVLEQEYGPYHADTLGVYSNLAGTYDAMGRLDEAIEILEYVVEMREEKLGT 659
Query: 409 AEDELGEARRLLEELKKKA 353
A ++ + +R L EL K+A
Sbjct: 660 ANPDVDDEKRRLAELLKEA 678
>gb|AAL87157.1|AF480496_11 putative kinesin light chain gene [Oryza sativa (japonica
cultivar-group)]
Length = 711
Score = 45.4 bits (106), Expect = 5e-04
Identities = 24/79 (30%), Positives = 41/79 (51%)
Frame = -3
Query: 589 AAQMFAVAKDIMDVSLGPHHADTIEACPNLSKAYGEMGSYVLAAEFQQQVIDAWASHGAS 410
AA++F A+ +++ GP+H DT+ NL+ Y MG A E + V+ +
Sbjct: 603 AAELFEEARAVLEQEYGPYHPDTLGVYSNLAGTYDAMGRLDEAIEILEHVVGMREEKLGT 662
Query: 409 AEDELGEARRLLEELKKKA 353
A ++ + +R L EL K+A
Sbjct: 663 ANPDVDDEKRRLAELLKEA 681
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,343,437
Number of Sequences: 1393205
Number of extensions: 10463460
Number of successful extensions: 29099
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 28000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29087
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
