Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018825A_C01 KMC018825A_c01
(532 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567025.1| Expressed protein; protein id: At3g55605.1, sup... 97 9e-20
pir||T47699 hypothetical protein F1I16.10 - Arabidopsis thaliana... 97 9e-20
ref|NP_195825.1| putative protein; protein id: At5g02050.1, supp... 97 2e-19
gb|AAM64272.1| unknown [Arabidopsis thaliana] 95 5e-19
pir||T01009 hypothetical protein At2g39790 [imported] - Arabidop... 87 1e-16
>ref|NP_567025.1| Expressed protein; protein id: At3g55605.1, supported by cDNA:
250217. [Arabidopsis thaliana]
gi|21554314|gb|AAM63419.1| unknown [Arabidopsis
thaliana]
Length = 258
Score = 97.4 bits (241), Expect = 9e-20
Identities = 50/109 (45%), Positives = 72/109 (65%)
Frame = -2
Query: 528 SESSIP*VVSVFKGNGVSLEFGVTAFPDEIPIDSLSINPPEESEDDQLSYEAPEFTDLDE 349
+ESSIP VV+V K +G+SLEF TAFPDEI ID LS+N P++S ++QL+Y+ P+F +LDE
Sbjct: 151 NESSIPLVVTVTKKSGLSLEFSCTAFPDEIVIDGLSVNRPDDSSEEQLTYDGPDFQELDE 210
Query: 348 ISAKGFSQVS*NPGDQTQYHPTFAKNTCLPKTTKEYLVWLKNLKNFIEK 202
K F + G + F + K ++EYL+WLK LK F+++
Sbjct: 211 NMRKSFHKFLETRGIKAS-ATDFLYEYMMKKDSREYLLWLKKLKTFVQE 258
>pir||T47699 hypothetical protein F1I16.10 - Arabidopsis thaliana
gi|7263548|emb|CAB81585.1| putative protein [Arabidopsis
thaliana]
Length = 474
Score = 97.4 bits (241), Expect = 9e-20
Identities = 50/109 (45%), Positives = 72/109 (65%)
Frame = -2
Query: 528 SESSIP*VVSVFKGNGVSLEFGVTAFPDEIPIDSLSINPPEESEDDQLSYEAPEFTDLDE 349
+ESSIP VV+V K +G+SLEF TAFPDEI ID LS+N P++S ++QL+Y+ P+F +LDE
Sbjct: 367 NESSIPLVVTVTKKSGLSLEFSCTAFPDEIVIDGLSVNRPDDSSEEQLTYDGPDFQELDE 426
Query: 348 ISAKGFSQVS*NPGDQTQYHPTFAKNTCLPKTTKEYLVWLKNLKNFIEK 202
K F + G + F + K ++EYL+WLK LK F+++
Sbjct: 427 NMRKSFHKFLETRGIKAS-ATDFLYEYMMKKDSREYLLWLKKLKTFVQE 474
>ref|NP_195825.1| putative protein; protein id: At5g02050.1, supported by cDNA:
22324. [Arabidopsis thaliana] gi|11358397|pir||T48226
hypothetical protein T7H20.100 - Arabidopsis thaliana
gi|7340679|emb|CAB82978.1| putative protein [Arabidopsis
thaliana]
Length = 267
Score = 96.7 bits (239), Expect = 2e-19
Identities = 54/105 (51%), Positives = 72/105 (68%)
Frame = -2
Query: 516 IP*VVSVFKGNGVSLEFGVTAFPDEIPIDSLSINPPEESEDDQLSYEAPEFTDLDEISAK 337
+P VVSV KG+GV LEFGV+A+PDEI IDSLSI P+ S++D L+YE P+F DLDE K
Sbjct: 165 VPMVVSVQKGDGVCLEFGVSAYPDEIVIDSLSIKQPQGSDND-LAYEGPDFDDLDENLQK 223
Query: 336 GFSQVS*NPGDQTQYHPTFAKNTCLPKTTKEYLVWLKNLKNFIEK 202
F + G + + TF + K ++EYL WLK+LK+F+EK
Sbjct: 224 AFHRYLEIRGIKPSF-TTFLADYVANKDSREYLQWLKDLKSFVEK 267
>gb|AAM64272.1| unknown [Arabidopsis thaliana]
Length = 267
Score = 95.1 bits (235), Expect = 5e-19
Identities = 53/105 (50%), Positives = 71/105 (67%)
Frame = -2
Query: 516 IP*VVSVFKGNGVSLEFGVTAFPDEIPIDSLSINPPEESEDDQLSYEAPEFTDLDEISAK 337
+P VVSV KG+GV LEFGV+A+PDEI DSLSI P+ S++D L+YE P+F DLDE K
Sbjct: 165 VPMVVSVQKGDGVCLEFGVSAYPDEIVFDSLSIKQPQGSDND-LAYEGPDFDDLDENLQK 223
Query: 336 GFSQVS*NPGDQTQYHPTFAKNTCLPKTTKEYLVWLKNLKNFIEK 202
F + G + + TF + K ++EYL WLK+LK+F+EK
Sbjct: 224 AFHRYLEIRGIKPSF-TTFLADYVANKDSREYLQWLKDLKSFVEK 267
>pir||T01009 hypothetical protein At2g39790 [imported] - Arabidopsis thaliana
Length = 429
Score = 87.0 bits (214), Expect = 1e-16
Identities = 49/109 (44%), Positives = 67/109 (60%)
Frame = -2
Query: 528 SESSIP*VVSVFKGNGVSLEFGVTAFPDEIPIDSLSINPPEESEDDQLSYEAPEFTDLDE 349
+ESSIP VV+V K +G++LEF AFPDEI ID+LS+ P +S +DQL+ E P+F DLDE
Sbjct: 322 NESSIPLVVTVTKKSGLTLEFSCMAFPDEIAIDALSVKHPGDSLEDQLANEGPDFEDLDE 381
Query: 348 ISAKGFSQVS*NPGDQTQYHPTFAKNTCLPKTTKEYLVWLKNLKNFIEK 202
K F + G + F K +EY +WLKN+K F+E+
Sbjct: 382 NLKKTFYKFLEIRGVKAS-TTNFLHEYMTRKVNREYFLWLKNVKEFMEQ 429
Score = 34.7 bits (78), Expect = 0.72
Identities = 17/37 (45%), Positives = 24/37 (63%)
Frame = -2
Query: 525 ESSIP*VVSVFKGNGVSLEFGVTAFPDEIPIDSLSIN 415
E S P VV+V K NGVS+EF A+ D I + L+++
Sbjct: 138 ELSFPLVVTVIKKNGVSIEFTCQAYADYIDLTDLTVH 174
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,004,456
Number of Sequences: 1393205
Number of extensions: 9381296
Number of successful extensions: 26705
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 25543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26615
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
