Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018804A_C01 KMC018804A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA81891.1| epoxide hydrolase 116 2e-25
pir||T07048 probable epoxide hydrolase (EC 3.3.2.3) (clone EH10.... 115 3e-25
pir||T07043 probable epoxide hydrolase (EC 3.3.2.3) (clone EH3.1... 114 4e-25
ref|NP_567228.1| coded for by A. thaliana cDNA T04215; protein i... 112 2e-24
gb|AAM28292.1| epoxide hydrolase [Ananas comosus] 110 6e-24
>gb|AAA81891.1| epoxide hydrolase
Length = 321
Score = 116 bits (290), Expect = 2e-25
Identities = 50/71 (70%), Positives = 63/71 (88%)
Frame = -1
Query: 486 AQVQVPVKFVVGDLDLTYNGPGAKDYIHQGGFKRDVPLLDDVVVLEGVGHFLHQERPHEI 307
AQV+VP KF+VG+ DL Y+ PGAK+YIH GGFK+DVPLL++VVVLEG HF++QERPHEI
Sbjct: 251 AQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVNQERPHEI 310
Query: 306 NNHIYDFLRKF 274
+ HIYDF++KF
Sbjct: 311 SKHIYDFIQKF 321
>pir||T07048 probable epoxide hydrolase (EC 3.3.2.3) (clone EH10.1) - potato
gi|407944|gb|AAA81892.1| epoxide hydrolase
Length = 321
Score = 115 bits (288), Expect = 3e-25
Identities = 50/71 (70%), Positives = 62/71 (86%)
Frame = -1
Query: 486 AQVQVPVKFVVGDLDLTYNGPGAKDYIHQGGFKRDVPLLDDVVVLEGVGHFLHQERPHEI 307
AQV+VP KF+VG+ DL Y+ PGAK+YIH GGFK+DVPLL++VVVLEG HF+ QERPHEI
Sbjct: 251 AQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKKDVPLLEEVVVLEGAAHFVSQERPHEI 310
Query: 306 NNHIYDFLRKF 274
+ HIYDF++KF
Sbjct: 311 SKHIYDFIQKF 321
>pir||T07043 probable epoxide hydrolase (EC 3.3.2.3) (clone EH3.1) - potato
gi|407938|gb|AAA81889.1| epoxide hydrolase
Length = 321
Score = 114 bits (286), Expect = 4e-25
Identities = 50/71 (70%), Positives = 62/71 (86%)
Frame = -1
Query: 486 AQVQVPVKFVVGDLDLTYNGPGAKDYIHQGGFKRDVPLLDDVVVLEGVGHFLHQERPHEI 307
AQV+VP KF+VG+ DL Y+ PGAK+YIH GGFK DVPLL++VVVLEG HF++QERPHEI
Sbjct: 251 AQVKVPTKFIVGEFDLVYHIPGAKEYIHNGGFKEDVPLLEEVVVLEGSAHFVNQERPHEI 310
Query: 306 NNHIYDFLRKF 274
+ HIYDF++KF
Sbjct: 311 SKHIYDFIQKF 321
>ref|NP_567228.1| coded for by A. thaliana cDNA T04215; protein id: At4g02340.1,
supported by cDNA: gi_20856514 [Arabidopsis thaliana]
gi|7435060|pir||T01316 epoxide hydrolase homolog
T14P8.15 - Arabidopsis thaliana
gi|3193297|gb|AAC19281.1| similar to epoxide hydrolases
[Arabidopsis thaliana] gi|7268994|emb|CAB80727.1| coded
for by A. thaliana cDNA T04215~strong similarity to
similar to epoxide hydrolases~Contains
Aminoacyl-transfer RNA synthetases class-II signatures
AA89-98~contains EST gb:T04215 [Arabidopsis thaliana]
gi|20856515|gb|AAM26670.1| AT4g02340/T14P8_15
[Arabidopsis thaliana] gi|23308303|gb|AAN18121.1|
At4g02340/T14P8_15 [Arabidopsis thaliana]
Length = 324
Score = 112 bits (281), Expect = 2e-24
Identities = 47/70 (67%), Positives = 60/70 (85%)
Frame = -1
Query: 483 QVQVPVKFVVGDLDLTYNGPGAKDYIHQGGFKRDVPLLDDVVVLEGVGHFLHQERPHEIN 304
Q++VPVKF+VGDLD+TYN PG K+YIH+GG K+ VP L +VVV+EGVGHFLHQE+P E+
Sbjct: 247 QIKVPVKFIVGDLDITYNIPGTKEYIHEGGLKKHVPFLQEVVVMEGVGHFLHQEKPDEVT 306
Query: 303 NHIYDFLRKF 274
+HIY F +KF
Sbjct: 307 DHIYGFFKKF 316
>gb|AAM28292.1| epoxide hydrolase [Ananas comosus]
Length = 318
Score = 110 bits (276), Expect = 6e-24
Identities = 47/71 (66%), Positives = 62/71 (87%)
Frame = -1
Query: 486 AQVQVPVKFVVGDLDLTYNGPGAKDYIHQGGFKRDVPLLDDVVVLEGVGHFLHQERPHEI 307
A++QVP KF+VGDLDLTY+ P +DYIH+GGFK +VPLL++VVVLEGVGHF+ QER E+
Sbjct: 248 AKIQVPTKFIVGDLDLTYHYPNIQDYIHKGGFKNEVPLLEEVVVLEGVGHFIQQERAEEV 307
Query: 306 NNHIYDFLRKF 274
+HIY+F++KF
Sbjct: 308 TDHIYNFIKKF 318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,530,758
Number of Sequences: 1393205
Number of extensions: 10114447
Number of successful extensions: 27104
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 26116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27024
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
