Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018771A_C01 KMC018771A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194016.1| unknown protein; protein id: At4g22850.1 [Arabi... 104 7e-22
gb|AAO42138.1| unknown protein [Arabidopsis thaliana] gi|2882731... 104 7e-22
ref|NP_172707.1| hypothetical protein; protein id: At1g12450.1 [... 103 2e-21
ref|NP_192937.1| putative protein; protein id: At4g12000.1, supp... 100 2e-20
gb|AAF79638.1|AC025416_12 F5O11.19 [Arabidopsis thaliana] 86 3e-16
>ref|NP_194016.1| unknown protein; protein id: At4g22850.1 [Arabidopsis thaliana]
gi|7486891|pir||T04580 hypothetical protein T12H17.240 -
Arabidopsis thaliana gi|2832606|emb|CAA16570.1|
predicted protein [Arabidopsis thaliana]
gi|3292810|emb|CAA19800.1| putative protein [Arabidopsis
thaliana] gi|7269132|emb|CAB79240.1| predicted protein
[Arabidopsis thaliana]
Length = 217
Score = 104 bits (260), Expect = 7e-22
Identities = 53/89 (59%), Positives = 69/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 568 AVATTVKYGPYLCGSLVGMVPEVLVSLYTGILIRTLANASH-KEHTISVVQIVLNVVGLC 392
+VAT VKYGPY+ GSL+GMVPEV V++YTGIL+RTLA AS +E +SV Q++LN++G
Sbjct: 129 SVATRVKYGPYITGSLLGMVPEVFVAIYTGILVRTLAEASSAEEQGLSVTQVILNILGFL 188
Query: 391 ITVATVYFITVYAKRRLKELQKGGELLLQ 305
TVAT IT YAKR+L+ ++K E LLQ
Sbjct: 189 ATVATTILITKYAKRQLETMKKEDEALLQ 217
>gb|AAO42138.1| unknown protein [Arabidopsis thaliana] gi|28827310|gb|AAO50499.1|
unknown protein [Arabidopsis thaliana]
Length = 296
Score = 104 bits (260), Expect = 7e-22
Identities = 53/89 (59%), Positives = 69/89 (76%), Gaps = 1/89 (1%)
Frame = -1
Query: 568 AVATTVKYGPYLCGSLVGMVPEVLVSLYTGILIRTLANASH-KEHTISVVQIVLNVVGLC 392
+VAT VKYGPY+ GSL+GMVPEV V++YTGIL+RTLA AS +E +SV Q++LN++G
Sbjct: 208 SVATRVKYGPYITGSLLGMVPEVFVAIYTGILVRTLAEASSAEEQGLSVTQVILNILGFL 267
Query: 391 ITVATVYFITVYAKRRLKELQKGGELLLQ 305
TVAT IT YAKR+L+ ++K E LLQ
Sbjct: 268 ATVATTILITKYAKRQLETMKKEDEALLQ 296
>ref|NP_172707.1| hypothetical protein; protein id: At1g12450.1 [Arabidopsis
thaliana]
Length = 303
Score = 103 bits (256), Expect = 2e-21
Identities = 47/80 (58%), Positives = 63/80 (78%)
Frame = -1
Query: 568 AVATTVKYGPYLCGSLVGMVPEVLVSLYTGILIRTLANASHKEHTISVVQIVLNVVGLCI 389
A+AT V YGPY+ GSLVGMVPE+ VS+YTGI++RTLA AS HT+SVV+IV+NV+G C+
Sbjct: 211 ALATGVHYGPYILGSLVGMVPEIFVSIYTGIMLRTLAVASDTRHTLSVVEIVVNVLGFCV 270
Query: 388 TVATVYFITVYAKRRLKELQ 329
T + T+YAK++L +Q
Sbjct: 271 TASATIVCTIYAKKKLSAMQ 290
>ref|NP_192937.1| putative protein; protein id: At4g12000.1, supported by cDNA:
gi_18176120, supported by cDNA: gi_20465310 [Arabidopsis
thaliana] gi|7485582|pir||T06607 hypothetical protein
F16J13.70 - Arabidopsis thaliana
gi|4586105|emb|CAB40941.1| putative protein [Arabidopsis
thaliana] gi|7267901|emb|CAB78243.1| putative protein
[Arabidopsis thaliana] gi|18176121|gb|AAL59987.1|
unknown protein [Arabidopsis thaliana]
gi|20465311|gb|AAM20059.1| unknown protein [Arabidopsis
thaliana]
Length = 306
Score = 99.8 bits (247), Expect = 2e-20
Identities = 52/88 (59%), Positives = 66/88 (74%), Gaps = 1/88 (1%)
Frame = -1
Query: 568 AVATTVKYGPYLCGSLVGMVPEVLVSLYTGILIRTLANASHKEHT-ISVVQIVLNVVGLC 392
AVAT VK+GPY+ GSLVGM PE+ V++YTGILIRTLA+AS E +S++QIVLN+ G
Sbjct: 217 AVATRVKFGPYMAGSLVGMAPEIFVAIYTGILIRTLADASTAEQKGLSILQIVLNIFGFV 276
Query: 391 ITVATVYFITVYAKRRLKELQKGGELLL 308
TV T IT YAKR+L+ ++K E LL
Sbjct: 277 ATVVTTVLITKYAKRQLEVMKKEKEALL 304
>gb|AAF79638.1|AC025416_12 F5O11.19 [Arabidopsis thaliana]
Length = 371
Score = 85.9 bits (211), Expect = 3e-16
Identities = 47/114 (41%), Positives = 63/114 (55%), Gaps = 34/114 (29%)
Frame = -1
Query: 568 AVATTVKYGPYLCGSLVGMVPEVLVSLYT------------------------------- 482
A+AT V YGPY+ GSLVGMVPE+ VS+YT
Sbjct: 245 ALATGVHYGPYILGSLVGMVPEIFVSIYTYMPLSLSLCLLSQCLRHVLQNLKTGGFLFWD 304
Query: 481 ---GILIRTLANASHKEHTISVVQIVLNVVGLCITVATVYFITVYAKRRLKELQ 329
GI++RTLA AS HT+SVV+IV+NV+G C+T + T+YAK++L +Q
Sbjct: 305 ICRGIMLRTLAVASDTRHTLSVVEIVVNVLGFCVTASATIVCTIYAKKKLSAMQ 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,490,700
Number of Sequences: 1393205
Number of extensions: 9095101
Number of successful extensions: 22526
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 21914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22512
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
