Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018764A_C01 KMC018764A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195260.1| UDP-galactose transporter - like protein; prote... 178 7e-44
dbj|BAB10651.1| CMP-sialic acid transporter-like protein [Arabid... 133 3e-30
ref|NP_568596.1| CMP-sialic acid transporter-like protein; prote... 133 3e-30
emb|CAD43419.1| SI:bZ30I22.3 (novel protein similar to vertebrat... 116 3e-25
ref|NP_006407.1| solute carrier family 35 (CMP-sialic acid trans... 113 3e-24
>ref|NP_195260.1| UDP-galactose transporter - like protein; protein id: At4g35340.1
[Arabidopsis thaliana] gi|7488414|pir||T06123
UDP-galactose transport protein homolog F23E12.100 -
Arabidopsis thaliana gi|3080416|emb|CAA18735.1|
UDP-galactose transporter-like protein [Arabidopsis
thaliana] gi|7270486|emb|CAB80251.1| UDP-galactose
transporter-like protein [Arabidopsis thaliana]
Length = 102
Score = 178 bits (452), Expect = 7e-44
Identities = 89/102 (87%), Positives = 97/102 (94%)
Frame = -1
Query: 552 MGFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSMVMKYADNIVKVYSTS 373
M FNAVAI++QDFDAV NKGFFHGYSFIT+LMI NHALSGIAVSMVMKYADNIVKVYSTS
Sbjct: 1 MAFNAVAIVIQDFDAVANKGFFHGYSFITLLMILNHALSGIAVSMVMKYADNIVKVYSTS 60
Query: 372 VAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLHSAGKMQ 247
VAMLLTAVVSVFLF FHLSLAFFLG+ VVSV++YLHSAGK++
Sbjct: 61 VAMLLTAVVSVFLFNFHLSLAFFLGSTVVSVSVYLHSAGKLR 102
>dbj|BAB10651.1| CMP-sialic acid transporter-like protein [Arabidopsis thaliana]
Length = 323
Score = 133 bits (334), Expect = 3e-30
Identities = 75/179 (41%), Positives = 107/179 (58%), Gaps = 9/179 (5%)
Frame = -1
Query: 768 QWAAFILLTAGCTTAQLN----SNSDHVLQTPFQGWVMAIAMALLSGFAGVYTEAIIKKR 601
QW A LL G TT+Q+ ++ D + P QG+++ I A LS AG+YTE ++K R
Sbjct: 116 QWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEFLMK-R 174
Query: 600 PSRNINVQNFWLYVFGMGFNAVAILVQDFDAVMNKG-----FFHGYSFITVLMIFNHALS 436
+ + QN LY FG FN ++ DF KG F GYS T L++ N +
Sbjct: 175 NNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVLNLGST 234
Query: 435 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLHSA 259
G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F +L FLG ++ ++++++ A
Sbjct: 235 GLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFA 293
>ref|NP_568596.1| CMP-sialic acid transporter-like protein; protein id: At5g41760.1,
supported by cDNA: 103679. [Arabidopsis thaliana]
gi|21536568|gb|AAM60900.1| CMP-sialic acid
transporter-like protein [Arabidopsis thaliana]
gi|28393785|gb|AAO42302.1| putative CMP-sialic acid
transporter [Arabidopsis thaliana]
gi|28973255|gb|AAO63952.1| putative CMP-sialic acid
transporter [Arabidopsis thaliana]
Length = 340
Score = 133 bits (334), Expect = 3e-30
Identities = 75/179 (41%), Positives = 107/179 (58%), Gaps = 9/179 (5%)
Frame = -1
Query: 768 QWAAFILLTAGCTTAQLN----SNSDHVLQTPFQGWVMAIAMALLSGFAGVYTEAIIKKR 601
QW A LL G TT+Q+ ++ D + P QG+++ I A LS AG+YTE ++K R
Sbjct: 133 QWMAIGLLAVGTTTSQVKGCGEASCDSLFTAPIQGYLLGILSAGLSALAGIYTEFLMK-R 191
Query: 600 PSRNINVQNFWLYVFGMGFNAVAILVQDFDAVMNKG-----FFHGYSFITVLMIFNHALS 436
+ + QN LY FG FN ++ DF KG F GYS T L++ N +
Sbjct: 192 NNDTLYWQNLQLYTFGSLFNVARLIADDFRHGFEKGPWWQRIFDGYSITTWLVVLNLGST 251
Query: 435 GIAVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLHSA 259
G+ VS +MKYADNIVKVYSTS+AMLLT V S++LF F +L FLG ++ ++++++ A
Sbjct: 252 GLLVSWLMKYADNIVKVYSTSMAMLLTMVASIYLFSFKPTLQLFLGIVICIMSLHMYFA 310
>emb|CAD43419.1| SI:bZ30I22.3 (novel protein similar to vertebrate UDP-galactose
transporters) [Danio rerio]
Length = 347
Score = 116 bits (291), Expect = 3e-25
Identities = 67/179 (37%), Positives = 103/179 (57%), Gaps = 7/179 (3%)
Frame = -1
Query: 768 QWAAFILLTAGCTTAQLNSNSDH-------VLQTPFQGWVMAIAMALLSGFAGVYTEAII 610
QW + +LL AG Q+ S Q F+G + I L SGFAGVY E I+
Sbjct: 138 QWISLVLLFAGVAIVQVEQESGKQKEAVTAANQNYFKGLLSVIISCLSSGFAGVYFEKIL 197
Query: 609 KKRPSRNINVQNFWLYVFGMGFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGI 430
K S ++ ++N L +FG + + D A+ KGF GY+ + +IFN A G+
Sbjct: 198 KGS-SASVWMRNIQLGIFGTVLGLLGMWWNDGAAIAEKGFLFGYTPMVWGVIFNQAFGGL 256
Query: 429 AVSMVMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLHSAGK 253
V++V+KYADNI+K ++TS +++++ + SV+LFGFH+ L F LG +V A+Y++S K
Sbjct: 257 LVAVVVKYADNILKGFATSFSIIVSTITSVYLFGFHVDLVFTLGAGLVIGAVYMYSLPK 315
>ref|NP_006407.1| solute carrier family 35 (CMP-sialic acid transporter), member 1
[Homo sapiens] gi|2499226|sp|P78382|CMST_HUMAN
CMP-sialic acid transporter (CMP-Sia-Tr) (CMP-SA-Tr)
gi|2134920|pir||JC5023 CMP-sialic acid transporter -
human gi|1669558|dbj|BAA13522.1| CMP-sialic acid
transporter [Homo sapiens]
gi|17389549|gb|AAH17807.1|AAH17807 solute carrier family
35 (CMP-sialic acid transporter), member 1 [Homo
sapiens]
Length = 337
Score = 113 bits (283), Expect = 3e-24
Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Frame = -1
Query: 768 QWAAFILLTAGCTTAQ---LNSNSDHVLQTPFQGWVMAIAMALLSGFAGVYTEAIIKKRP 598
QW + +L AG T Q + V Q P G+ L SGFAGVY E ++K
Sbjct: 144 QWVSVFMLCAGVTLVQWKPAQATKVVVEQNPLLGFGAIAIAVLCSGFAGVYFEKVLKSSD 203
Query: 597 SRNINVQNFWLYVFGMGFNAVAILVQDFDAVMNKGFFHGYSFITVLMIFNHALSGIAVSM 418
+ ++ V+N +Y+ G+ + + D + KGFF+GY++ +IF ++ G+ S+
Sbjct: 204 T-SLWVRNIQMYLSGIIVTLAGVYLSDGAEIKEKGFFYGYTYYVWFVIFLASVGGLYTSV 262
Query: 417 VMKYADNIVKVYSTSVAMLLTAVVSVFLFGFHLSLAFFLGTIVVSVAIYLH 265
V+KY DNI+K +S + A++L+ + SV LFG ++L F LGT++V V+IYL+
Sbjct: 263 VVKYTDNIMKGFSAAAAIVLSTIASVMLFGLQITLTFALGTLLVCVSIYLY 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 644,502,828
Number of Sequences: 1393205
Number of extensions: 14411667
Number of successful extensions: 55160
Number of sequences better than 10.0: 139
Number of HSP's better than 10.0 without gapping: 53326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55017
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
