Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018763A_C01 KMC018763A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52256.1| hypothetical protein [Dictyostelium discoideum] 34 0.96
ref|NP_757570.1| conserved hypothetical protein [Mycoplasma pene... 32 6.2
>gb|AAO52256.1| hypothetical protein [Dictyostelium discoideum]
Length = 563
Score = 34.3 bits (77), Expect = 0.96
Identities = 25/74 (33%), Positives = 38/74 (50%)
Frame = -3
Query: 428 ISNSNC*SNAFFKKITQVVQVIYDITNQ*LPNFAKVVQIILLIIIWNENMASYQFI*VQT 249
I NSN S +FFK+IT +V I + L + + QI II N+N+ + I T
Sbjct: 454 IDNSNLNSFSFFKEITNLVVSIKSLKKFTLKS-SNTPQIFKNIIKRNQNIIHFHSIVFNT 512
Query: 248 NCMLENYFTFDFLF 207
N + Y++ F+F
Sbjct: 513 NWVYLGYYSERFIF 526
>ref|NP_757570.1| conserved hypothetical protein [Mycoplasma penetrans]
gi|26453642|dbj|BAC43974.1| conserved hypothetical
protein [Mycoplasma penetrans]
Length = 597
Score = 31.6 bits (70), Expect = 6.2
Identities = 21/73 (28%), Positives = 33/73 (44%), Gaps = 5/73 (6%)
Frame = -3
Query: 395 FKKITQVVQ-----VIYDITNQ*LPNFAKVVQIILLIIIWNENMASYQFI*VQTNCMLEN 231
FK +T V+ + D TN +F +V +I IW + + TN M N
Sbjct: 412 FKFLTNVINYNASVLTKDFTNYGFASFYVIVFLISFTQIWKMSKKT------NTNKMNLN 465
Query: 230 YFTFDFLFVLRPF 192
+F+F + F+ PF
Sbjct: 466 HFSFSYFFIFSPF 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 382,313,350
Number of Sequences: 1393205
Number of extensions: 7135710
Number of successful extensions: 11167
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11162
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
