Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018718A_C01 KMC018718A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179920.1| hypothetical protein; protein id: At2g23390.1, ... 186 2e-46
gb|ZP_00012657.1| hypothetical protein [Rhodopseudomonas palustris] 123 2e-27
ref|NP_539735.1| Hypothetical Cytosolic Protein [Brucella melite... 117 8e-26
ref|NP_698172.1| conserved hypothetical protein [Brucella suis 1... 117 8e-26
ref|NP_771774.1| blr5134 [Bradyrhizobium japonicum] gi|27353399|... 114 7e-25
>ref|NP_179920.1| hypothetical protein; protein id: At2g23390.1, supported by cDNA:
gi_20453182 [Arabidopsis thaliana]
gi|7486179|pir||T01128 hypothetical protein At2g23390
[imported] - Arabidopsis thaliana
gi|3242702|gb|AAC23754.1| hypothetical protein
[Arabidopsis thaliana] gi|20453183|gb|AAM19832.1|
At2g23390/F26B6.4 [Arabidopsis thaliana]
gi|25090334|gb|AAN72279.1| At2g23390/F26B6.4
[Arabidopsis thaliana]
Length = 469
Score = 186 bits (472), Expect = 2e-46
Identities = 84/106 (79%), Positives = 96/106 (90%)
Frame = -1
Query: 579 LIGGDTLFGRLWGCRPQTYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLP 400
LIGGDTLFGRLWGCRP +YYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLP
Sbjct: 363 LIGGDTLFGRLWGCRPDSYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLP 422
Query: 399 VTTYSCHYLIDDEFRNAIEDFLLRESSQMKLVMKLLRDSGPFKEGV 262
V TYSCHY+ D+ FR AI++FL+RES+QM V++L+ + GPFKE +
Sbjct: 423 VKTYSCHYIFDEGFRQAIDEFLVRESNQMDYVIRLMHEDGPFKEKI 468
>gb|ZP_00012657.1| hypothetical protein [Rhodopseudomonas palustris]
Length = 480
Score = 123 bits (308), Expect = 2e-27
Identities = 62/109 (56%), Positives = 75/109 (67%)
Frame = -1
Query: 576 IGGDTLFGRLWGCRPQTYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPV 397
IGGDTLFGR WG ++P LHFE CYYQAI+ AI LK VEAGAQGEHKI RGYLP
Sbjct: 373 IGGDTLFGRHWGAIE--HHPFLHFEVCYYQAIDFAITRGLKVVEAGAQGEHKIARGYLPQ 430
Query: 396 TTYSCHYLIDDEFRNAIEDFLLRESSQMKLVMKLLRDSGPFKEGVVF*P 250
TTYS H++ D R AI D+L RE + + + L ++GPFK+G + P
Sbjct: 431 TTYSAHFIADPALRRAIADYLKRERMYVDEMGRELTEAGPFKKGNIADP 479
>ref|NP_539735.1| Hypothetical Cytosolic Protein [Brucella melitensis]
gi|25367481|pir||AD3354 hypothetical cytosolic protein
BMEI0818 [imported] - Brucella melitensis (strain 16M)
gi|17982762|gb|AAL51999.1| Hypothetical Cytosolic
Protein [Brucella melitensis 16M]
Length = 395
Score = 117 bits (294), Expect = 8e-26
Identities = 54/103 (52%), Positives = 75/103 (72%)
Frame = -1
Query: 576 IGGDTLFGRLWGCRPQTYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPV 397
IGG+TLFGR WGC +P LHFE CY+QAI+ AIE L+ VEAGAQGEHK+ RGY+PV
Sbjct: 294 IGGNTLFGRHWGCIED--HPFLHFEVCYHQAIDFAIEHKLRVVEAGAQGEHKLARGYVPV 351
Query: 396 TTYSCHYLIDDEFRNAIEDFLLRESSQMKLVMKLLRDSGPFKE 268
TT+S HYL ++ FRNA+ ++L E +++ + L + P+++
Sbjct: 352 TTHSAHYLANESFRNAVRNYLDSERREVEHIHAALEEHSPYRK 394
>ref|NP_698172.1| conserved hypothetical protein [Brucella suis 1330]
gi|23348000|gb|AAN30087.1|AE014417_6 conserved
hypothetical protein [Brucella suis 1330]
Length = 395
Score = 117 bits (294), Expect = 8e-26
Identities = 54/103 (52%), Positives = 75/103 (72%)
Frame = -1
Query: 576 IGGDTLFGRLWGCRPQTYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPV 397
IGG+TLFGR WGC +P LHFE CY+QAI+ AIE L+ VEAGAQGEHK+ RGY+PV
Sbjct: 294 IGGNTLFGRHWGCIED--HPFLHFEVCYHQAIDFAIEHKLRVVEAGAQGEHKLARGYVPV 351
Query: 396 TTYSCHYLIDDEFRNAIEDFLLRESSQMKLVMKLLRDSGPFKE 268
TT+S HYL ++ FRNA+ ++L E +++ + L + P+++
Sbjct: 352 TTHSAHYLANESFRNAVRNYLDSERREVEHIHAALEEHSPYRK 394
>ref|NP_771774.1| blr5134 [Bradyrhizobium japonicum] gi|27353399|dbj|BAC50399.1|
blr5134 [Bradyrhizobium japonicum USDA 110]
Length = 418
Score = 114 bits (286), Expect = 7e-25
Identities = 57/104 (54%), Positives = 71/104 (67%)
Frame = -1
Query: 576 IGGDTLFGRLWGCRPQTYYPSLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIQRGYLPV 397
IG DTLFGR WG ++P LHFE CYYQAI+ AI L VEAGAQGEHKI RGYLP
Sbjct: 312 IGSDTLFGRNWGA--VEHHPFLHFEVCYYQAIDFAITRGLTHVEAGAQGEHKIARGYLPK 369
Query: 396 TTYSCHYLIDDEFRNAIEDFLLRESSQMKLVMKLLRDSGPFKEG 265
TT+S H++ D R AI+D+L RE + + + L + GPF++G
Sbjct: 370 TTHSAHFIADPGLRRAIDDYLKRERAYVAEAGRELAELGPFRKG 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,277,823
Number of Sequences: 1393205
Number of extensions: 8804232
Number of successful extensions: 18188
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 17827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18147
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
