Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018687A_C01 KMC018687A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566453.1| expressed protein; protein id: At3g13340.1, sup... 134 4e-31
dbj|BAB02803.1| WD domain protein-like [Arabidopsis thaliana] 134 4e-31
ref|NP_568838.1| WD-repeat protein-like; protein id: At5g56190.1... 133 1e-30
gb|AAM61064.1| WD-repeat protein-like [Arabidopsis thaliana] 133 1e-30
dbj|BAB09301.1| WD-repeat protein-like [Arabidopsis thaliana] 133 1e-30
>ref|NP_566453.1| expressed protein; protein id: At3g13340.1, supported by cDNA:
gi_15081810 [Arabidopsis thaliana]
gi|15081811|gb|AAK82560.1| AT3g13340/MDC11_13
[Arabidopsis thaliana] gi|22655036|gb|AAM98109.1|
At3g13340/MDC11_13 [Arabidopsis thaliana]
Length = 447
Score = 134 bits (338), Expect = 4e-31
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = -2
Query: 497 LAMAEPADFVHVYDVKSGYEREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 318
+AMAEPADFVHVYDV +GYE EQEIDFFGEISGISFSPDTE+LFIGVWDRTYGSLLE+GR
Sbjct: 377 MAMAEPADFVHVYDVSNGYETEQEIDFFGEISGISFSPDTEALFIGVWDRTYGSLLEFGR 436
Query: 317 RQNYSYLDSMI 285
R+NYSYLDS +
Sbjct: 437 RRNYSYLDSYL 447
>dbj|BAB02803.1| WD domain protein-like [Arabidopsis thaliana]
Length = 418
Score = 134 bits (338), Expect = 4e-31
Identities = 62/71 (87%), Positives = 68/71 (95%)
Frame = -2
Query: 497 LAMAEPADFVHVYDVKSGYEREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 318
+AMAEPADFVHVYDV +GYE EQEIDFFGEISGISFSPDTE+LFIGVWDRTYGSLLE+GR
Sbjct: 348 MAMAEPADFVHVYDVSNGYETEQEIDFFGEISGISFSPDTEALFIGVWDRTYGSLLEFGR 407
Query: 317 RQNYSYLDSMI 285
R+NYSYLDS +
Sbjct: 408 RRNYSYLDSYL 418
>ref|NP_568838.1| WD-repeat protein-like; protein id: At5g56190.1, supported by cDNA:
109499. [Arabidopsis thaliana]
Length = 447
Score = 133 bits (335), Expect = 1e-30
Identities = 60/71 (84%), Positives = 69/71 (96%)
Frame = -2
Query: 497 LAMAEPADFVHVYDVKSGYEREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 318
+AMAEPADFVH+YD KSGY++EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR
Sbjct: 377 VAMAEPADFVHIYDTKSGYKKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 436
Query: 317 RQNYSYLDSMI 285
++Y+YLDS++
Sbjct: 437 TRDYTYLDSLL 447
>gb|AAM61064.1| WD-repeat protein-like [Arabidopsis thaliana]
Length = 447
Score = 133 bits (335), Expect = 1e-30
Identities = 60/71 (84%), Positives = 69/71 (96%)
Frame = -2
Query: 497 LAMAEPADFVHVYDVKSGYEREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 318
+AMAEPADFVH+YD KSGY++EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR
Sbjct: 377 VAMAEPADFVHIYDTKSGYKKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 436
Query: 317 RQNYSYLDSMI 285
++Y+YLDS++
Sbjct: 437 TRDYTYLDSLL 447
>dbj|BAB09301.1| WD-repeat protein-like [Arabidopsis thaliana]
Length = 456
Score = 133 bits (335), Expect = 1e-30
Identities = 60/71 (84%), Positives = 69/71 (96%)
Frame = -2
Query: 497 LAMAEPADFVHVYDVKSGYEREQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 318
+AMAEPADFVH+YD KSGY++EQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR
Sbjct: 386 VAMAEPADFVHIYDTKSGYKKEQEIDFFGEISGISFSPDTESLFIGVWDRTYGSLLEYGR 445
Query: 317 RQNYSYLDSMI 285
++Y+YLDS++
Sbjct: 446 TRDYTYLDSLL 456
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,522,773
Number of Sequences: 1393205
Number of extensions: 10149700
Number of successful extensions: 26045
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 25148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26038
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
