Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018680A_C01 KMC018680A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566293.1| expressed protein; protein id: At3g06780.1, sup... 50 2e-05
gb|AAO53143.1| similar to Oceanobacillus iheyensis. 2-nitropropa... 33 2.8
ref|NP_220058.1| Histidyl tRNA Synthetase [Chlamydia trachomatis... 33 3.7
ref|NP_297203.1| histidyl-tRNA synthetase [Chlamydia muridarum] ... 32 4.8
ref|NP_770245.1| bll3605 [Bradyrhizobium japonicum] gi|27351865|... 32 6.2
>ref|NP_566293.1| expressed protein; protein id: At3g06780.1, supported by cDNA:
gi_15450370 [Arabidopsis thaliana]
gi|7549635|gb|AAF63820.1| hypothetical protein
[Arabidopsis thaliana]
Length = 201
Score = 50.1 bits (118), Expect = 2e-05
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = -3
Query: 599 IMLSNCLHFAFKRIVQIVTDGSIVDSDREKVPARLAPVC 483
I LSNC+HFAFKRIV+IVTDG +REK+ L+PVC
Sbjct: 168 IALSNCVHFAFKRIVRIVTDG-----EREKLNIALSPVC 201
>gb|AAO53143.1| similar to Oceanobacillus iheyensis. 2-nitropropane dioxygenase
[Dictyostelium discoideum]
Length = 406
Score = 33.1 bits (74), Expect = 2.8
Identities = 19/61 (31%), Positives = 29/61 (47%)
Frame = +3
Query: 378 LYNIYSNYPIEQGSNSQSRPNKELIC*SAQNFTDSANRSQSGGNFFPIRIHNRPIRNNLN 557
LYNI +N +N+ + N + N ++ N + + NF PI I N+ NN N
Sbjct: 89 LYNINNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNFLPIEILNKINNNNNN 144
Query: 558 N 560
N
Sbjct: 145 N 145
>ref|NP_220058.1| Histidyl tRNA Synthetase [Chlamydia trachomatis]
gi|7674346|sp|O84547|SYH_CHLTR Histidyl-tRNA synthetase
(Histidine--tRNA ligase) (HisRS) gi|7437820|pir||H71500
histidine-tRNA ligase (EC 6.1.1.21) - Chlamydia
trachomatis (serotype D, strain UW3/Cx)
gi|3328982|gb|AAC68145.1| Histidyl tRNA Synthetase
[Chlamydia trachomatis]
Length = 428
Score = 32.7 bits (73), Expect = 3.7
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +3
Query: 90 PYIRFTKNIWQQGKLWKPTKHLGNNTC 170
PY+ KN+W+ LWK +H + C
Sbjct: 14 PYVTSPKNLWRNSSLWKRVEHAAHRIC 40
>ref|NP_297203.1| histidyl-tRNA synthetase [Chlamydia muridarum]
gi|13878790|sp|Q9PJJ9|SYH_CHLMU Histidyl-tRNA synthetase
(Histidine--tRNA ligase) (HisRS) gi|11271807|pir||F81660
histidyl-tRNA synthetase TC0830 [imported] - Chlamydia
muridarum (strain Nigg) gi|7190857|gb|AAF39630.1|
histidyl-tRNA synthetase [Chlamydia muridarum]
Length = 428
Score = 32.3 bits (72), Expect = 4.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 90 PYIRFTKNIWQQGKLWKPTKHLGNNTC 170
PY+ +KN+W+ LWK +H + C
Sbjct: 14 PYVTNSKNLWRNSFLWKTVEHAAHRIC 40
>ref|NP_770245.1| bll3605 [Bradyrhizobium japonicum] gi|27351865|dbj|BAC48870.1|
bll3605 [Bradyrhizobium japonicum USDA 110]
Length = 370
Score = 32.0 bits (71), Expect = 6.2
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +1
Query: 376 FCTIFTVITQLNKEAIANHDPTKN*FVDQLRTSPIQQTGANLAGTFSLSESTIDP 540
+C T + +L+K A +N + N + + R S + +TGAN AG + TIDP
Sbjct: 273 YCVQDTFLAELDKRAGSNQINSAN--LQERRISYVLKTGANWAGPIRSFKLTIDP 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,318,227
Number of Sequences: 1393205
Number of extensions: 9808875
Number of successful extensions: 21285
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21271
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
