Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018657A_C01 KMC018657A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564462.1| protein disulfide isomerase, putative; protein ... 67 2e-10
gb|AAF79381.1|AC007887_40 F15O4.20 [Arabidopsis thaliana] 57 1e-07
sp|P15362|P69_MYCHR Transport system permease protein p69 gi|808... 35 0.40
ref|XP_130404.1| RIKEN cDNA 2410003M22 [Mus musculus] gi|2502173... 34 0.90
ref|NP_701721.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.90
>ref|NP_564462.1| protein disulfide isomerase, putative; protein id: At1g35620.1,
supported by cDNA: gi_14423497 [Arabidopsis thaliana]
gi|14423498|gb|AAK62431.1|AF386986_1 Unknown protein
[Arabidopsis thaliana]
Length = 440
Score = 66.6 bits (161), Expect = 2e-10
Identities = 40/87 (45%), Positives = 58/87 (65%), Gaps = 2/87 (2%)
Frame = -2
Query: 520 REGRTVQKRLSGPSLMQFIHRSFDIRMVYMIVFMVAVFILIQTLGGKGGDEHHRVPN--Q 347
REGRT +K+++GPS M FI+ IR VY++VF+VAV +++++LG R +
Sbjct: 356 REGRTEKKKINGPSFMGFINSMIGIRSVYILVFLVAVIMMLRSLGQVEEPTGVRTATAVR 415
Query: 346 EQVDHASSSVSEVESKEEYKPGDKKED 266
E+VD A ++V E ES E+KP DKKED
Sbjct: 416 ERVDQA-TTVPEDES-SEHKPSDKKED 440
>gb|AAF79381.1|AC007887_40 F15O4.20 [Arabidopsis thaliana]
Length = 473
Score = 57.4 bits (137), Expect = 1e-07
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
Frame = -2
Query: 520 REGRTVQKRLSGPSLMQFIHRSFDIRMVYMIVFMVAVFILIQTLGGKGGDEHHRVPN--Q 347
REGRT +K+++GPS M FI+ IR VY++VF+VAV +++++LG R +
Sbjct: 356 REGRTEKKKINGPSFMGFINSMIGIRSVYILVFLVAVIMMLRSLGQVEEPTGVRTATAVR 415
Query: 346 EQVDHASSSVSEVESKEEYKPGDKK 272
E+VD A ++V E ESK + PG+ K
Sbjct: 416 ERVDQA-TTVPEDESK--FGPGEIK 437
>sp|P15362|P69_MYCHR Transport system permease protein p69 gi|80894|pir||S01830
transport system permease protein P69 homolog -
Mycoplasma hyorhinis gi|150176|gb|AAA25429.1| protein 69
gi|288405|emb|CAA32358.1| p69 [Mycoplasma hyorhinis]
Length = 580
Score = 35.4 bits (80), Expect = 0.40
Identities = 18/67 (26%), Positives = 35/67 (51%), Gaps = 5/67 (7%)
Frame = +2
Query: 251 HVLNLIFLF-----VSWFILFFAFNF*NRAACMIYLFLIWYSMVFITSFTAKGLNKYEYC 415
+++N+I +F +S F+ FF+ F A + LF W+S +++ + LN +
Sbjct: 119 YIINIIIIFFKAFPISLFVYFFSIGFDKELAATLILF--WFSWLWMHKYFLDFLNNLDKT 176
Query: 416 NHKYNHV 436
N+K H+
Sbjct: 177 NYKIMHM 183
>ref|XP_130404.1| RIKEN cDNA 2410003M22 [Mus musculus] gi|25021735|ref|XP_203882.1|
RIKEN cDNA 2410003M22 [Mus musculus]
gi|28076929|ref|NP_081468.1| RIKEN cDNA 2410003M22 [Mus
musculus] gi|17391212|gb|AAH18513.1| Unknown (protein
for MGC:27991) [Mus musculus]
Length = 377
Score = 34.3 bits (77), Expect = 0.90
Identities = 35/148 (23%), Positives = 64/148 (42%), Gaps = 19/148 (12%)
Frame = -2
Query: 505 VQKRLSGPSLMQFIHRSFDIRMVYMIVFMVAVFILIQTLGGKGGDEHHRVPNQEQVDHAS 326
+QK L P L++ HR FDIR ++ +++ + + + +H Q++ H +
Sbjct: 182 IQKYLERPLLLEPGHRKFDIRSWVLVDHQYNIYLYREGVLRTASEPYHVDNFQDKTCHLT 241
Query: 325 SSVSEVESKEEYKPGDKKED*I*H-------------MQSSSL----NVIRDTLKSTLPI 197
+ + E + Y ++ + ++SS L ++IR L S P
Sbjct: 242 NHCIQKEYSKNYGKYEEGNEMFFEEFNQYLTSALNITLESSILLQIKHIIRSCLMSVEPA 301
Query: 196 GMCKYLEFAYF--LNFDF*VLSKLYVFL 119
K+L + F L FDF V +L V+L
Sbjct: 302 ISTKHLPYQSFQLLGFDFMVDEELKVWL 329
>ref|NP_701721.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496893|gb|AAN36445.1|AE014850_10 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 2792
Score = 34.3 bits (77), Expect = 0.90
Identities = 23/80 (28%), Positives = 42/80 (51%), Gaps = 5/80 (6%)
Frame = -2
Query: 238 LNVIRDTLKSTLPIGMCKYLEFAYFLNFDF*VLSKLYVFLHFHFL--T*KGLFIVSNREM 65
LN++ + M KYL++ +F NF F + +++F +F F+ T K L+ + +E
Sbjct: 647 LNILLSFCINNYQDNMYKYLKYFFFSNFYF--YNPIFLFYYFSFISCTEKNLYEIYLKEF 704
Query: 64 IKLLTLL*FT---YILPIYI 14
IK L + Y+LP ++
Sbjct: 705 IKFLNNIIVQFHFYLLPFFL 724
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,557,258
Number of Sequences: 1393205
Number of extensions: 7897928
Number of successful extensions: 20615
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20586
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
