Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018650A_C01 KMC018650A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO72389.1| synaptobrevin-like protein [Oryza sativa (japonic... 183 1e-45
pir||D86180 hypothetical protein [imported] - Arabidopsis thalia... 182 3e-45
ref|NP_171967.1| synaptobrevin 7B, putative; protein id: At1g047... 182 3e-45
ref|NP_180871.1| putative synaptobrevin; protein id: At2g33120.1... 181 1e-44
dbj|BAC42934.1| putative synaptobrevin [Arabidopsis thaliana] 177 8e-44
>gb|AAO72389.1| synaptobrevin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 220
Score = 183 bits (465), Expect = 1e-45
Identities = 98/140 (70%), Positives = 107/140 (76%)
Frame = -2
Query: 642 TAAPNSLNKEFGYLFEFVLRLA*L*LCS*L*MIFALCRPKLKEHMQYCVDHPEEVSKLAK 463
TAA NSLN++FG KLKEHMQYCVDHPEE+SKLAK
Sbjct: 100 TAAANSLNRDFG--------------------------SKLKEHMQYCVDHPEEISKLAK 133
Query: 462 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMK 283
VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QAQDFR +GT++RRKMWLQNMK
Sbjct: 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQAGTQVRRKMWLQNMK 193
Query: 282 IKLIVLAILIALILIIVLPI 223
IKLIVL I+IALILII+L +
Sbjct: 194 IKLIVLGIIIALILIIILSV 213
>pir||D86180 hypothetical protein [imported] - Arabidopsis thaliana
gi|2494115|gb|AAB80624.1| Strong similarity to
Arabidopsis ATHSAR1 (gb|M90418). ESTs
gb|T44122,gb|N65276,gb|AA041135 come from this gene.
[Arabidopsis thaliana]
Length = 175
Score = 182 bits (463), Expect = 3e-45
Identities = 99/140 (70%), Positives = 107/140 (75%)
Frame = -2
Query: 642 TAAPNSLNKEFGYLFEFVLRLA*L*LCS*L*MIFALCRPKLKEHMQYCVDHPEEVSKLAK 463
TA NSLNKEFG KLKEHMQYC+DHP+E+SKLAK
Sbjct: 56 TAQANSLNKEFG--------------------------SKLKEHMQYCMDHPDEISKLAK 89
Query: 462 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMK 283
VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QAQDFR +GT++RRKMWLQNMK
Sbjct: 90 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMK 149
Query: 282 IKLIVLAILIALILIIVLPI 223
IKLIVLAI+IALILIIVL +
Sbjct: 150 IKLIVLAIIIALILIIVLSV 169
>ref|NP_171967.1| synaptobrevin 7B, putative; protein id: At1g04750.1 [Arabidopsis
thaliana] gi|27805768|sp|Q9ZTW3|V721_ARATH
Vesicle-associated membrane protein 721 (AtVAMP721)
(v-SNARE synaptobrevin 7B) (AtVAMP7B)
gi|4090884|gb|AAC98905.1| vesicle-associated membrane
protein 7B; synaptobrevin 7B [Arabidopsis thaliana]
gi|19310540|gb|AAL85003.1| At1g04740/T1G11_1
[Arabidopsis thaliana] gi|22137292|gb|AAM91491.1|
At1g04740/T1G11_1 [Arabidopsis thaliana]
Length = 219
Score = 182 bits (463), Expect = 3e-45
Identities = 99/140 (70%), Positives = 107/140 (75%)
Frame = -2
Query: 642 TAAPNSLNKEFGYLFEFVLRLA*L*LCS*L*MIFALCRPKLKEHMQYCVDHPEEVSKLAK 463
TA NSLNKEFG KLKEHMQYC+DHP+E+SKLAK
Sbjct: 100 TAQANSLNKEFG--------------------------SKLKEHMQYCMDHPDEISKLAK 133
Query: 462 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMK 283
VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QAQDFR +GT++RRKMWLQNMK
Sbjct: 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTTGTQMRRKMWLQNMK 193
Query: 282 IKLIVLAILIALILIIVLPI 223
IKLIVLAI+IALILIIVL +
Sbjct: 194 IKLIVLAIIIALILIIVLSV 213
>ref|NP_180871.1| putative synaptobrevin; protein id: At2g33120.1, supported by cDNA:
2443., supported by cDNA: gi_16930420, supported by
cDNA: gi_18252974, supported by cDNA: gi_18958027,
supported by cDNA: gi_600709 [Arabidopsis thaliana]
gi|21542460|sp|P47192|V722_ARATH Vesicle-associated
membrane protein 722 (AtVAMP722) (Synaptobrevin-related
protein 1) gi|25408247|pir||F84741 probable
synaptobrevin [imported] - Arabidopsis thaliana
gi|2924792|gb|AAC04921.1| putative synaptobrevin
[Arabidopsis thaliana]
gi|16930421|gb|AAL31896.1|AF419564_1 At2g33120/F25I18.14
[Arabidopsis thaliana] gi|18252975|gb|AAL62414.1|
putative synaptobrevin [Arabidopsis thaliana]
gi|18958028|gb|AAL79587.1| At2g33120/F25I18.14
[Arabidopsis thaliana] gi|21389653|gb|AAM48025.1|
putative synaptobrevin [Arabidopsis thaliana]
gi|21592481|gb|AAM64431.1| putative synaptobrevin
[Arabidopsis thaliana] gi|22135820|gb|AAM91096.1|
At2g33120/F25I18.14 [Arabidopsis thaliana]
Length = 221
Score = 181 bits (458), Expect = 1e-44
Identities = 98/140 (70%), Positives = 105/140 (75%)
Frame = -2
Query: 642 TAAPNSLNKEFGYLFEFVLRLA*L*LCS*L*MIFALCRPKLKEHMQYCVDHPEEVSKLAK 463
TA NSLNKEFG KLKEHMQYC+DHP+E+SKLAK
Sbjct: 100 TAQANSLNKEFG--------------------------SKLKEHMQYCMDHPDEISKLAK 133
Query: 462 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMK 283
VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENL QAQDFR GT++RRKMW QNMK
Sbjct: 134 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMK 193
Query: 282 IKLIVLAILIALILIIVLPI 223
IKLIVLAI+IALILII+L I
Sbjct: 194 IKLIVLAIIIALILIIILSI 213
>dbj|BAC42934.1| putative synaptobrevin [Arabidopsis thaliana]
Length = 285
Score = 177 bits (450), Expect = 8e-44
Identities = 95/140 (67%), Positives = 103/140 (72%)
Frame = -2
Query: 642 TAAPNSLNKEFGYLFEFVLRLA*L*LCS*L*MIFALCRPKLKEHMQYCVDHPEEVSKLAK 463
TA NSLN+EFG KLKEHMQYCVDHP+E+SKLAK
Sbjct: 165 TAQANSLNREFG--------------------------SKLKEHMQYCVDHPDEISKLAK 198
Query: 462 VKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHHQAQDFRNSGTKIRRKMWLQNMK 283
VKAQV+EVKGVMMENIEKVLDRGEKIELLVDKTENL QAQDFR GTKIRRKMW +NMK
Sbjct: 199 VKAQVTEVKGVMMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMK 258
Query: 282 IKLIVLAILIALILIIVLPI 223
IKLIVL I+I LILII+L +
Sbjct: 259 IKLIVLGIIITLILIIILSV 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,745,257
Number of Sequences: 1393205
Number of extensions: 11524458
Number of successful extensions: 50930
Number of sequences better than 10.0: 185
Number of HSP's better than 10.0 without gapping: 34944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49209
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
