Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018623A_C01 KMC018623A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA27045.1| predicted protein [Neurospora crassa] 33 1.9
pir||S55377 urPAB protein precursor - Peptostreptococcus magnus ... 33 1.9
dbj|BAB99091.1| Hypothetical protein [Corynebacterium glutamicum... 32 4.2
pir||G02329 replication control protein 1 - human gi|1171204|gb|... 31 7.1
gb|AAH11539.1|AAH11539 Unknown (protein for MGC:9175) [Homo sapi... 31 7.1
>gb|EAA27045.1| predicted protein [Neurospora crassa]
Length = 412
Score = 33.1 bits (74), Expect = 1.9
Identities = 20/80 (25%), Positives = 34/80 (42%)
Frame = +2
Query: 257 PKPTTRLCRISSVPMKRKPTAWLQRQQKGSFHSSENKAMRETSDDSKNTAATKAEGGEG* 436
P+ + R+ +V P Q ++ F E K + + +K A AEGG+G
Sbjct: 232 PRDAENVARLGTVLSNLIPKVEDQIKRAAHFSRKEKKREEKEAKKNKRRVAAAAEGGQGV 291
Query: 437 SR*EKPRRNARDHCAVSETN 496
+P + R H +S T+
Sbjct: 292 GEGVRPGMHQRGHSHLSATS 311
>pir||S55377 urPAB protein precursor - Peptostreptococcus magnus
gi|854371|emb|CAA88839.1| protein urPAB [Finegoldia
magna]
Length = 345
Score = 33.1 bits (74), Expect = 1.9
Identities = 32/135 (23%), Positives = 52/135 (37%)
Frame = +3
Query: 90 HNHKKIKSKHAYSAETISIEHDVKTLETNKSPSKPKLTKRHMTSERRRYEQL*PALPNLQ 269
+N K+ K+ + E + + +T ET K PSKP +T T E + + P+ P L
Sbjct: 172 NNSYKVSQKYDGNWEYVLSPNLAETPETPKKPSKPDVTPNPSTPEVEEKDPVLPSYPRLD 231
Query: 270 PDSAGLVACR*KGSLRRGFSGNKRGHFTALRTRR*GKLLTIPKTQQQQKLKGAKDEVGKR 449
G S T + + GK K ++ ++ G +++ GK
Sbjct: 232 -----------NHYFMNGDSSTSDEGKTPGKEEKPGKEEKPGKEEKPEQKPGKEEKPGKE 280
Query: 450 SPEGMPEIIVP*AKP 494
G E AKP
Sbjct: 281 EKPGKEEKPANPAKP 295
>dbj|BAB99091.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032]
Length = 298
Score = 32.0 bits (71), Expect = 4.2
Identities = 15/54 (27%), Positives = 24/54 (43%)
Frame = +3
Query: 66 ISESYHNAHNHKKIKSKHAYSAETISIEHDVKTLETNKSPSKPKLTKRHMTSER 227
+ E HN HN K + + T + + +T TN P+ K T H+ +R
Sbjct: 3 VCEILHNVHNPKDFPLRFLFLPRTTTAQLRSETCSTNHPPASSKETAHHVPHQR 56
>pir||G02329 replication control protein 1 - human gi|1171204|gb|AAA86260.1|
replication control protein 1
Length = 861
Score = 31.2 bits (69), Expect = 7.1
Identities = 21/71 (29%), Positives = 30/71 (41%)
Frame = +3
Query: 21 KLKRLSNDTYNMRE*ISESYHNAHNHKKIKSKHAYSAETISIEHDVKTLETNKSPSKPKL 200
K + LS++ + ES + KSK A S EH K +E+ S SK +
Sbjct: 164 KFRPLSSELFAELNKPQESAAKCQKPVRAKSKSAESPSWTPAEHVAKRIESRHSASKSRQ 223
Query: 201 TKRHMTSERRR 233
T H + R R
Sbjct: 224 TPTHPLTPRAR 234
>gb|AAH11539.1|AAH11539 Unknown (protein for MGC:9175) [Homo sapiens]
Length = 861
Score = 31.2 bits (69), Expect = 7.1
Identities = 21/71 (29%), Positives = 30/71 (41%)
Frame = +3
Query: 21 KLKRLSNDTYNMRE*ISESYHNAHNHKKIKSKHAYSAETISIEHDVKTLETNKSPSKPKL 200
K + LS++ + ES + KSK A S EH K +E+ S SK +
Sbjct: 164 KFRPLSSELFAELNKPQESAAKCQKPVRAKSKSAESPSWTPAEHVAKRIESRHSASKSRQ 223
Query: 201 TKRHMTSERRR 233
T H + R R
Sbjct: 224 TPTHPLTPRAR 234
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,985,603
Number of Sequences: 1393205
Number of extensions: 8485321
Number of successful extensions: 25374
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 24369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25361
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
