Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018621A_C01 KMC018621A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22709.1| unknown protein [Arabidopsis thaliana] 82 6e-15
gb|AAM93687.1| unknown protein [Oryza sativa (japonica cultivar-... 80 2e-14
ref|NP_194476.1| hypothetical protein; protein id: At4g27460.1 [... 66 3e-10
ref|NP_200186.1| putative protein; protein id: At5g53750.1 [Arab... 62 6e-09
gb|EAA29873.1| predicted protein [Neurospora crassa] 45 6e-04
>gb|AAO22709.1| unknown protein [Arabidopsis thaliana]
Length = 391
Score = 81.6 bits (200), Expect = 6e-15
Identities = 49/95 (51%), Positives = 69/95 (72%), Gaps = 5/95 (5%)
Frame = -3
Query: 514 SWPSFSSTSSSSDEDFG-----SSGKSWKSSAARGARRTEATVTVCYPWSSLVPVMIQAL 350
S S+S++S S E+ S G+S SS+AR AR++EA V C P SSL+ VMIQA+
Sbjct: 298 SLSSYSTSSGYSSEEEAPVRTTSYGRSM-SSSARMARKSEAIV--CNPKSSLMAVMIQAV 354
Query: 349 AHRVSYAWVVEEDGTLMGIVTFENMLKIFREQLKS 245
AHRV+YAWVVE+DG +G+VTF ++LK+FR+ L++
Sbjct: 355 AHRVNYAWVVEKDGCFVGMVTFVDILKVFRKFLEN 389
>gb|AAM93687.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 385
Score = 79.7 bits (195), Expect = 2e-14
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Frame = -3
Query: 514 SWPSFSSTSSSSDEDFGSSGKSWKSSAARGARRTEATVTVCYPWSSLVPVMIQALAHRVS 335
++ S S++SSS DE G + + + S+ RR+ VC P SSLV VM+QALAHR S
Sbjct: 295 AFSSSSTSSSSDDEAHGRAARLRRPSSGSYGRRSTEEPVVCSPASSLVAVMMQALAHRAS 354
Query: 334 YAWVVEEDG--TLMGIVTFENMLKIFREQLK 248
Y WV++ED L GIVTF ++L +FREQL+
Sbjct: 355 YLWVLDEDDDCRLAGIVTFADVLTVFREQLQ 385
>ref|NP_194476.1| hypothetical protein; protein id: At4g27460.1 [Arabidopsis
thaliana] gi|7486257|pir||T08938 hypothetical protein
F27G19.60 - Arabidopsis thaliana
gi|4972071|emb|CAB43878.1| hypothetical protein
[Arabidopsis thaliana] gi|7269600|emb|CAB81396.1|
hypothetical protein [Arabidopsis thaliana]
Length = 433
Score = 65.9 bits (159), Expect = 3e-10
Identities = 41/80 (51%), Positives = 56/80 (69%), Gaps = 5/80 (6%)
Frame = -3
Query: 514 SWPSFSSTSSSSDEDFG-----SSGKSWKSSAARGARRTEATVTVCYPWSSLVPVMIQAL 350
S S+S++S S E+ S G+S SS+AR AR++EA V C P SSL+ VMIQA+
Sbjct: 298 SLSSYSTSSGYSSEEEAPVRTTSYGRSM-SSSARMARKSEAIV--CNPKSSLMAVMIQAV 354
Query: 349 AHRVSYAWVVEEDGTLMGIV 290
AHRV+YAWVVE+DG +G++
Sbjct: 355 AHRVNYAWVVEKDGCFVGML 374
>ref|NP_200186.1| putative protein; protein id: At5g53750.1 [Arabidopsis thaliana]
gi|9759069|dbj|BAB09547.1|
gene_id:MGN6.11~pir||T08938~strong similarity to unknown
protein [Arabidopsis thaliana]
Length = 427
Score = 61.6 bits (148), Expect = 6e-09
Identities = 40/75 (53%), Positives = 50/75 (66%), Gaps = 8/75 (10%)
Frame = -3
Query: 496 STSSSSDEDF--------GSSGKSWKSSAARGARRTEATVTVCYPWSSLVPVMIQALAHR 341
S+ SSSDE+ S G+S SSAAR AR++ A V C SSL+ VMIQA+AHR
Sbjct: 318 SSGSSSDEESPAGKTRMTSSYGRS-VSSAARMARKSVAIV--CNRKSSLMAVMIQAIAHR 374
Query: 340 VSYAWVVEEDGTLMG 296
VSY WV++EDG L+G
Sbjct: 375 VSYVWVIDEDGCLIG 389
>gb|EAA29873.1| predicted protein [Neurospora crassa]
Length = 1336
Score = 45.1 bits (105), Expect = 6e-04
Identities = 32/72 (44%), Positives = 37/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 298 PSRS-HPLPQPTRNSPCVQVPESSPAPTSSTDSKQLQSPPFSSPPSPPRTSSSSRSCQSP 474
PS S +P P T +SP P SS +P+SS S L SPP P S P +SSS S SP
Sbjct: 60 PSYSPYPPPPQTNSSPSPSPPSSSSSPSSSPPS-PLTSPP---PSSNPSSSSSPSSSSSP 115
Query: 475 HPTKKTLKKTTA 510
P TTA
Sbjct: 116 PPASAAATTTTA 127
Score = 33.1 bits (74), Expect = 2.3
Identities = 22/94 (23%), Positives = 37/94 (38%)
Frame = +1
Query: 259 P*KFSTYFQT*QSPSRSHPLPQPTRNSPCVQVPESSPAPTSSTDSKQLQSPPFSSPPSPP 438
P +S Y Q+ S P P + +SP P +P S++ SP SS P P
Sbjct: 59 PPSYSPYPPPPQTNSSPSPSPPSSSSSPSSSPPSPLTSPPPSSNPSSSSSPSSSSSPPPA 118
Query: 439 RTSSSSRSCQSPHPTKKTLKKTTAKKVAQPHFHR 540
++++ + S + + + Q F R
Sbjct: 119 SAAATTTTAASDSGSGSNHPEPEHRPAPQSSFSR 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,699,394
Number of Sequences: 1393205
Number of extensions: 12470505
Number of successful extensions: 111596
Number of sequences better than 10.0: 1658
Number of HSP's better than 10.0 without gapping: 68274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99591
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
