Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018619A_C01 KMC018619A_c01
(699 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182013.1| 60S ribosomal protein L30; protein id: At2g4486... 89 6e-17
dbj|BAC55730.1| putative 60S ribosomal protein L30 [Oryza sativa... 76 4e-13
gb|AAO50767.1| similar to Mus musculus (Mouse). Similar to 60S r... 58 1e-07
ref|NP_594839.1| 60s ribosomal protein l24-3 (L30) [Schizosaccha... 49 9e-05
gb|AAH42273.1| Similar to chromosome 15 open reading frame 15 [X... 43 0.004
>ref|NP_182013.1| 60S ribosomal protein L30; protein id: At2g44860.1, supported by
cDNA: 34564., supported by cDNA: gi_15146219, supported
by cDNA: gi_20466078 [Arabidopsis thaliana]
gi|7440779|pir||T00407 60S ribosomal protein L30
[imported] - Arabidopsis thaliana
gi|2344898|gb|AAC31838.1| 60S ribosomal protein L30
[Arabidopsis thaliana] gi|15146220|gb|AAK83593.1|
At2g44860/T13E15.13 [Arabidopsis thaliana]
gi|20466079|gb|AAM19961.1| At2g44860/T13E15.13
[Arabidopsis thaliana] gi|21592958|gb|AAM64908.1| 60S
ribosomal protein L30 [Arabidopsis thaliana]
Length = 159
Score = 89.0 bits (219), Expect = 6e-17
Identities = 53/100 (53%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Frame = -3
Query: 697 EFERKRNRPERYDRNVKEDVLKAIPKIAKIRAIREETH-HKKMKQGKHEKLRREAEKELK 521
EFE+KRNRPERYDRNV E+ L AI KIAKIR RE H ++K K +KL + KEL
Sbjct: 70 EFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKLNDDM-KELD 128
Query: 520 QGINMVKAPSVFQQDPSYTLPAIKVKVSQQKSVENHPMEE 401
Q I+MV+AP IKV VS++KSV+N MEE
Sbjct: 129 QNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159
>dbj|BAC55730.1| putative 60S ribosomal protein L30 [Oryza sativa (japonica
cultivar-group)]
Length = 163
Score = 76.3 bits (186), Expect = 4e-13
Identities = 47/95 (49%), Positives = 60/95 (62%), Gaps = 1/95 (1%)
Frame = -3
Query: 697 EFERKRNRPERYDRNVKEDVLKAIPKIAKIRAIREETH-HKKMKQGKHEKLRREAEKELK 521
EFERKRNRPERYDRNV E LKAI I KIR R++ H ++ KQGK ++ R+A KEL+
Sbjct: 70 EFERKRNRPERYDRNVTEQTLKAISLITKIRHERQKKHITERQKQGKTKQRERDA-KELE 128
Query: 520 QGINMVKAPSVFQQDPSYTLPAIKVKVSQQKSVEN 416
Q I M+ + + VKVSQQ++ EN
Sbjct: 129 QDIQMLPKKVTLSTQKT----KVVVKVSQQQTEEN 159
>gb|AAO50767.1| similar to Mus musculus (Mouse). Similar to 60S ribosomal protein
L30 isolog [Dictyostelium discoideum]
Length = 164
Score = 57.8 bits (138), Expect = 1e-07
Identities = 24/73 (32%), Positives = 46/73 (62%)
Frame = -3
Query: 697 EFERKRNRPERYDRNVKEDVLKAIPKIAKIRAIREETHHKKMKQGKHEKLRREAEKELKQ 518
EFE+KRNRP +YDR + + + A+ ++ KI+ RE+T +K +G +++ KE+ Q
Sbjct: 70 EFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQKKQKLKEINQ 129
Query: 517 GINMVKAPSVFQQ 479
+++++ PS +
Sbjct: 130 NLSLIRGPSALNK 142
>ref|NP_594839.1| 60s ribosomal protein l24-3 (L30) [Schizosaccharomyces pombe]
gi|1710534|sp|Q10353|RL24_SCHPO 60S ribosomal protein
L24 (L30) gi|7490024|pir||T38170 60s ribosomal protein
l24-3 (L30) - fission yeast (Schizosaccharomyces pombe)
gi|1220288|emb|CAA93900.1| 60s ribosomal protein l24-3
(L30) [Schizosaccharomyces pombe]
Length = 192
Score = 48.5 bits (114), Expect = 9e-05
Identities = 30/95 (31%), Positives = 48/95 (49%)
Frame = -3
Query: 685 KRNRPERYDRNVKEDVLKAIPKIAKIRAIREETHHKKMKQGKHEKLRREAEKELKQGINM 506
+RN P RYDRNV L A+ +++++ A RE +KK GK + +EA+K + Q +
Sbjct: 75 RRNVPVRYDRNVIATTLNAMKRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNVPQ 134
Query: 505 VKAPSVFQQDPSYTLPAIKVKVSQQKSVENHPMEE 401
+P + +V+ Q S E + MEE
Sbjct: 135 F-------TEPEGEVETAEVQEPQIVSDEEYTMEE 162
>gb|AAH42273.1| Similar to chromosome 15 open reading frame 15 [Xenopus laevis]
Length = 163
Score = 43.1 bits (100), Expect = 0.004
Identities = 22/69 (31%), Positives = 44/69 (62%), Gaps = 1/69 (1%)
Frame = -3
Query: 697 EFERKRNRPERYDRNVKEDVLKAIPKIAKIRAIREETH-HKKMKQGKHEKLRREAEKELK 521
EFE++RN P +Y R + ++A+ ++ +I+ R+ ++K+GK E + + KE+K
Sbjct: 70 EFEKRRNEPVKYQRELWSKSVEAMKRVEEIKQKRQARFIMNRLKKGK-ELQKAQDIKEVK 128
Query: 520 QGINMVKAP 494
Q I++++AP
Sbjct: 129 QNIHLIRAP 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,683,445
Number of Sequences: 1393205
Number of extensions: 11494557
Number of successful extensions: 32707
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 31185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32588
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
