Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC018567A_C01 KMC018567A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM01137.1|AC108884_19 Putative Transcription initiation fact... 103 3e-40
ref|NP_193833.1| putative protein; protein id: At4g21010.1 [Arab... 65 2e-19
ref|NP_193766.1| putative protein; protein id: At4g20330.1, supp... 79 3e-14
pir||A49070 ecdysone-inducible protein E78A - fruit fly (Drosoph... 34 1.3
ref|NP_149062.1| nesprin 1 isoform longest; synaptic nuclei expr... 32 3.9
>gb|AAM01137.1|AC108884_19 Putative Transcription initiation factor IIE, beta subunit [Oryza
sativa (japonica cultivar-group)]
Length = 279
Score = 103 bits (256), Expect(2) = 3e-40
Identities = 49/62 (79%), Positives = 55/62 (88%)
Frame = -3
Query: 546 QALKAAGQIWLLSNFDSHDEDIAYPNDPKVHIKVDDDLKQLFRSIELPQDMIDIEKDLQK 367
QALKAAG++WLLSN DS EDI YPNDPK IKVDDDLKQLFR +ELP+DM+DIEK+LQK
Sbjct: 167 QALKAAGEVWLLSNMDSQ-EDIVYPNDPKAKIKVDDDLKQLFREMELPRDMVDIEKELQK 225
Query: 366 NG 361
NG
Sbjct: 226 NG 227
Score = 84.0 bits (206), Expect(2) = 3e-40
Identities = 38/54 (70%), Positives = 48/54 (88%)
Frame = -1
Query: 371 KRMGMKPATNTAKRRSAAEIQGIPSKSKPKKKKREISKRTKLTNTHLPELFQNL 210
++ G+KP TNTAKRR+AA+I G+ K+KPKKK+REI++RTKLTN HLPELFQNL
Sbjct: 224 QKNGIKPMTNTAKRRAAAQINGVQPKAKPKKKQREITRRTKLTNAHLPELFQNL 277
>ref|NP_193833.1| putative protein; protein id: At4g21010.1 [Arabidopsis thaliana]
gi|7486972|pir||T10643 hypothetical protein T13K14.170 -
Arabidopsis thaliana gi|5262791|emb|CAB45896.1| putative
protein [Arabidopsis thaliana]
gi|7268898|emb|CAB79101.1| putative protein [Arabidopsis
thaliana] gi|22136644|gb|AAM91641.1| unknown protein
[Arabidopsis thaliana]
Length = 275
Score = 64.7 bits (156), Expect(2) = 2e-19
Identities = 30/53 (56%), Positives = 44/53 (82%), Gaps = 1/53 (1%)
Frame = -1
Query: 368 RMGMKPATNTAKRRSAAEIQGIPSKSK-PKKKKREISKRTKLTNTHLPELFQN 213
++G+KPATN A+RR+A ++ G+ +K K KKKK+EI+ RTKLTN+H+ ELFQ+
Sbjct: 223 KIGLKPATNIAERRAAEQLHGVSNKPKDKKKKKKEITNRTKLTNSHMLELFQS 275
Score = 52.4 bits (124), Expect(2) = 2e-19
Identities = 31/63 (49%), Positives = 46/63 (72%), Gaps = 1/63 (1%)
Frame = -3
Query: 546 QALKAAGQI-WLLSNFDSHDEDIAYPNDPKVHIKVDDDLKQLFRSIELPQDMIDIEKDLQ 370
++LK++G+I WLLSN DS E Y N+ + + K+DD+LK LFR I +P DM+++EK+L
Sbjct: 166 KSLKSSGEIFWLLSNTDSK-EGTVYRNNME-YPKIDDELKALFRDI-IPSDMLEVEKELL 222
Query: 369 KNG 361
K G
Sbjct: 223 KIG 225
>ref|NP_193766.1| putative protein; protein id: At4g20330.1, supported by cDNA:
gi_14326522, supported by cDNA: gi_18700217, supported
by cDNA: gi_20466493 [Arabidopsis thaliana]
gi|25407575|pir||G85230 hypothetical protein AT4g20330
[imported] - Arabidopsis thaliana
gi|5738378|emb|CAB52821.1| putative protein [Arabidopsis
thaliana] gi|7268828|emb|CAB79033.1| putative protein
[Arabidopsis thaliana]
gi|14326523|gb|AAK60306.1|AF385715_1 AT4g20330/F9F13_2
[Arabidopsis thaliana] gi|18700218|gb|AAL77719.1|
AT4g20330/F9F13_2 [Arabidopsis thaliana]
gi|20466494|gb|AAM20564.1| putative protein [Arabidopsis
thaliana]
Length = 286
Score = 79.3 bits (194), Expect = 3e-14
Identities = 40/57 (70%), Positives = 48/57 (84%), Gaps = 1/57 (1%)
Frame = -1
Query: 368 RMGMKPATNTAKRRSAAEIQGIPSKSKPKKKKR-EISKRTKLTNTHLPELFQNLFNS 201
++G+KPATNTA+RR+AA+ GI +K K KKKK+ EISKRTKLTN HLPELFQNL S
Sbjct: 226 KIGLKPATNTAERRAAAQTHGISNKPKDKKKKKQEISKRTKLTNAHLPELFQNLNGS 282
Score = 73.2 bits (178), Expect = 2e-12
Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 20/100 (20%)
Frame = -3
Query: 546 QALKAAGQIWLLSNFDSHDEDIAYPNDPKVHIKVDDDLKQLFRSIELPQDMIDIEKDLQK 367
+AL A+G I+LLSN EDIAYPND K IKVDD+ K LFR I +P DM+D+EK+L K
Sbjct: 170 KALSASGDIYLLSN---SQEDIAYPNDFKCEIKVDDEFKALFRDINIPNDMLDVEKELLK 226
Query: 366 NG--------------------NEARNQHRKEEECSRNSR 307
G N+ +++ +K++E S+ ++
Sbjct: 227 IGLKPATNTAERRAAAQTHGISNKPKDKKKKKQEISKRTK 266
>pir||A49070 ecdysone-inducible protein E78A - fruit fly (Drosophila
melanogaster)
Length = 864
Score = 33.9 bits (76), Expect = 1.3
Identities = 22/77 (28%), Positives = 34/77 (43%)
Frame = -3
Query: 390 DIEKDLQKNGNEARNQHRKEEECSRNSRHSFQVQA*EEEEGN*QENQADQHPSSGALSEL 211
D+ KD ++G E ++ EEE + EEEEG +E ++ AL +
Sbjct: 40 DLIKDFTRDGEEQPSEEEAEEEDNEED---------EEEEGEEEEEDEEEDEDEEALLPV 90
Query: 210 IQFLINSNQSFRLVHID 160
+ F N+N F L D
Sbjct: 91 VNF--NANSDFNLHFFD 105
>ref|NP_149062.1| nesprin 1 isoform longest; synaptic nuclei expressed gene 1; nesprin
1; enaptin [Homo sapiens] gi|22597198|gb|AAN03486.1|
enaptin [Homo sapiens]
Length = 8749
Score = 32.3 bits (72), Expect = 3.9
Identities = 26/83 (31%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = -3
Query: 516 LLSNFDSHDEDIAYPNDPKVHIKVDDDLKQLFRSIELPQDMIDIEKDLQKNGNEARNQHR 337
LL F+S ++ A + ++H KV+D LK+L +++E P D+ IE DL + + +H
Sbjct: 2243 LLKEFESEVKNKALRLE-ELHSKVND-LKELTKNLETPPDLQFIEADLMQ-----KLEHA 2295
Query: 336 KE-EECSRNSRHSFQVQA*EEEE 271
KE E ++ + F Q+ + E+
Sbjct: 2296 KEITEVAKGTLKDFTAQSTQVEK 2318
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,228,237
Number of Sequences: 1393205
Number of extensions: 9105777
Number of successful extensions: 30064
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 27853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29669
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
